LOC111195059


Basic Information

Item Value
gene id LOC111195059
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18614892 ~ 18618612 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240560
tttttttttttttttaatgtggattTACAGTCCAAAACTTTTAACATAAACTACTTTTGACATTCaactagaaatgttaaatgtttgctCATGTTTTGATGAAGTGCTTTTGGCACTTTGCCTTTTGACCTAAGGGTGTACTCTGTGGAAAAGAGCCTTCGAAGTGGCTCAGCAGAATCCAGAAGGGATCATCTCTACGGGTGCCAGTGTACCTGGACTCGGAGGAAGAACAGGACTCCCTATTTTTCTATCTTCAGGATGTCCTGAAATCTGCACCAGTAGAATTCCACATTGAGGATCAAGTGCAGTTCATTTTGGATGTTTTGTTCCCAGAGTGCATCACCCAAGCCATGTCTACACTACAGGGAATAACTATACAAGAGGCTGAAGAGTTGTTTCTTTCAGGTCCTAACTACAGCAGAAGGTAAAAACAGTTACCTGTGTTTGAAATATCTGtatgaatgtttatttattgtgacTACCATTTTAATTGGGTGGGTGGTTGCGTGTTTGTGTCGGGGG
>XM_022681175.1
ACCTAGCCCATTCCAAATTTCACTCTCCTTCACACACTGTTAGACACTACCAATAATTTTTTGCAATCGTATATTCAGACCATCTCTCACATACTTACACTCTCACACCATTCTCACCCCCCCTCCCTTGCTAACTCTTTTAATTGCAGTTGAAATATGTCCTGGACAAAAGCCTTCCAGCAGCAGAATTGATTGTTAAAGATGACAATATCTGTCTTACACGTGAGGACTTGTGGAGTCTTGGGTTAAATCAGTGCATGGAGTCTACTATTGGGAATGCATGTTTTAAGATCATCAGAGAAGCTGCTCAAaaacatGGGAAAGATGTTTACATTGCTGACATGTATGTGGTTCCCACATGGAAAACGATGAATGTGGACCCACTCTCAAGTTTACCGAACAATCTGTGTTCCAAGGATGCGATTTTGTTCCCTGCATGGAGTATGCAACAGAATCAACTGGATCACTATTTGCTATGTGTTTTACTGGTTGTGGAGAGAGAGATCATTTTTCTAGATTCTGTACTCCCTGGTGGTTTTGGAGATGACTCGTACAAAACGATATTTAGACATATTGCAGGCCAGATTGACCCAAGACCCTGGACAGAGAAGACCGGCAGAAGTTTTGATCACTTCCCTCAACAAACTTCTGGGAACTACTGTGGCATCCTTATACTCATTtatgccCTCTGTATCTGCACCAATACCCCATTTATCTTCACAGAGaATGATGTGCCATTAATCCGCCAGTGGTGGTGCATCCTACTGATGGAAAGATTTCAGATTGAAGGACATGGCCAGAGGTTTGCTTTCTGGACTGACAAGGCTAGCAGGCTATTGCAAGGGACCCTTCAGCCACTTTTTAGGGTATCTAGGTCAATCACTTCAGACATTCCACCTCATGTGCAAACCATGGTCAACCGCACAGCCCAAGAAAAGAAGCTGGTAGACTTTGCTGTACAAGACCATGGAGTCCGGCAACATTTGTTGGGTGTACTCTGTGGAAAAGAGCCTTCGAAGTGGCTCAGCAGAATCCAGAAGGGATCATCTCTACGGGTGCCAGTGTACCTGGACTCGGAGGAAGAACAGGACTCCCTATTTTTCTATCTTCAGGATGTCCTGAAATCTGCACCAGTAGAATTCCACATTGAGGATCAAGTGCAGTTCATTTTGGATGTTTTGTTCCCAGAGTGCATCACCCAAGCCATGTCTACACTACAGGGAATAACTATACAAGAGGCTGAAGAGTTGTTTCTTTCAGGTCCTAACTACAGCAGAAGGTAAAAACAGTTACCTGTGTTTGAAATATCTGtat
>XM_022681176.1
AGAAGCTGCTCAAaaacatGGGAAAGATGTTTACATTGCTGACATGTATGTGGTTCCCACATGGAAAACGATGAATGTGGACCCACTCTCAAGTTTACCGGTAAAGTgaagttaaacacacacacagacagacagttgcACATTAATGCAATGATTTCTGTACAATGCACAGTAGTTGAATGGTtgcattttctttctctacaCCAGAACAATCTGTGTTCCAAGGATGCGATTTTGTTCCCTGCATGGAGTATGCAACAGAATCAACTGGATCACTATTTGCTATGTGTTTTACTGGTTGTGGAGAGAGAGATCATTTTTCTAGATTCTGTACTCCCTGGTGGTTTTGGAGATGACTCGTACAAAACGATATTTAGACATATTGCAGGCCAGATTGACCCAAGACCCTGGACAGAGAAGACCGGCAGAAGTTTTGATCACTTCCCTCAACAAACTTCTGGGAACTACTGTGGCATCCTTATACTCATTtatgccCTCTGTATCTGCACCAATACCCCATTTATCTTCACAGAGaATGATGTGCCATTAATCCGCCAGTGGTGGTGCATCCTACTGATGGAAAGATTTCAGATTGAAGGACATGGCCAGAGGTTTGCTTTCTGGACTGACAAGGCTAGCAGGCTATTGCAAGGGACCCTTCAGCCACTTTTTAGGGTATCTAGGTCAATCACTTCAGACATTCCACCTCATGTGCAAACCATGGTCAACCGCACAGCCCAAGAAAAGAAGCTGGTAGACTTTGCTGTACAAGACCATGGAGTCCGGCAACATTTGTTGGGTGTACTCTGTGGAAAAGAGCCTTCGAAGTGGCTCAGCAGAATCCAGAAGGGATCATCTCTACGGGTGCCAGTGTACCTGGACTCGGAGGAAGAACAGGACTCCCTATTTTTCTATCTTCAGGATGTCCTGAAATCTGCACCAGTAGAATTCCACATTGAGGATCAAGTGCAGTTCATTTTGGATGTTTTGTTCCCAGAGGTAAGGTTACTAGTGCATCACCCAAGCCATGTCTACACTACAGGGAATAACTATACAAGAGGCTGAAGAGTTGTTTCTTTCAGGTCCTAACTACAGCAG
>XM_022681177.1
AGAAGCTGCTCAAaaacatGGGAAAGATGTTTACATTGCTGACATGTATGTGGTTCCCACATGGAAAACGATGAATGTGGACCCACTCTCAAGTTTACCGGTAAAGTgaagttaaacacacacacagacagacagttgcACATTAATGCAATGATTTCTGTACAATGCACAGTAGTTGAATGGTtgcattttctttctctacaCCAGAACAATCTGTGTTCCAAGGATGCGATTTTGTTCCCTGCATGGAGTATGCAACAGAATCAACTGGATCACTATTTGCTATGTTTTACTGGTTGTGGAGAGAGAGATCATTTTTCTAGATTCTGTACTCCCTGGTGGTTTTGGAGATGACTCGTACAAAACGATATTTAGACATATTGCAGGCCAGATTGACCCAAGACCCTGGACAGAGAAGACCGGCAGAAGTTTTGATCACTTCCCTCAACAAACTTCTGGGAACTACTGTGGCATCCTTATACTCATTtatgccCTCTGTATCTGCACCAATACCCCATTTATCTTCACAGAGaATGATGTGCCATTAATCCGCCAGTGGTGGTGCATCCTACTGATGGAAAGATTTCAGATTGAAGGACATGGCCAGAGGTTTGCTTTCTGGACTGACAAGGCTAGCAGGCTATTGCAAGGGACCCTTCAGCCACTTTTTAGGGTATCTAGGTCAATCACTTCAGACATTCCACCTCATGTGCAAACCATGGTCAACCGCACAGCCCAAGAAAAGAAGCTGGTAGACTTTGCTGTACAAGACCATGGAGTCCGGCAACATTTGTTGGGTGTACTCTGTGGAAAAGAGCCTTCGAAGTGGCTCAGCAGAATCCAGAAGGGATCATCTCTACGGGTGCCAGTGTACCTGGACTCGGAGGAAGAACAGGACTCCCTATTTTTCTATCTTCAGGATGTCCTGAAATCTGCACCAGTAGAATTCCACATTGAGGATCAAGTGCAGTTCATTTTGGATGTTTTGTTCCCAGAGTGCATCACCCAAGCCATGTCTACACTACAGGGAATAACTATACAAGAGGCTGAAGAGTTGTTTCTTTCAGGTCCTAACTACAGCAGAAGGTAAAAACAGTTACCTGTGTTTGAAATATCTGtat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240560 False 522 lncRNA 0.40 2 18614892 18615995
XM_022681175.1 True 1314 mRNA 0.44 12 18614955 18618612
XM_022681176.1 False 1098 mRNA 0.44 10 18614993 18618217
XM_022681177.1 False 1121 mRNA 0.44 10 18614955 18618217

Neighbor

gene id symbol gene type direction distance location
pcna pcna,LOC107658578,LOC107583397 coding downstream 5759 18604544 ~ 18609133 (-)
LOC103026456 kcnip3,kcnip3b,LOC107092684,LOC106535652,LOC103473704,LOC103026456,LOC108440143,LOC107678047,LOC107572711,LOC107720714 coding downstream 19078 18579751 ~ 18595814 (-)
LOC103025819 rassf2 coding downstream 37127 18571229 ~ 18577765 (-)
LOC103025514 NA coding downstream 44830 18565701 ~ 18570062 (-)
LOC103023096 ddhd2,LOC108440555,LOC107678050,LOC107553701,LOC107720719 coding downstream 132776 18459004 ~ 18482116 (-)
LOC103045069 bmp1,LOC108440159,LOC105014870,LOC107710833,LOC107661342 coding upstream 30174 18648786 ~ 18684766 (-)
LOC103045381 LOC108440153 coding upstream 68058 18686670 ~ 18691097 (-)
LOC103045990 aak1b,LOC108440145,LOC107583399 coding upstream 127636 18746248 ~ 18791052 (-)
brf2 NA coding upstream 222459 18841071 ~ 18847381 (-)
LOC103028676 NA coding upstream 229383 18847995 ~ 18870141 (-)
G177596 NA non-coding downstream 49579 18561352 ~ 18565313 (-)
G177589 NA non-coding downstream 64025 18549010 ~ 18550867 (-)
G177584 NA non-coding downstream 77205 18534885 ~ 18537687 (-)
G177559 NA non-coding downstream 266238 18348298 ~ 18348654 (-)
G177555 NA non-coding downstream 276060 18338544 ~ 18338832 (-)
LOC111195060 NA non-coding upstream 1587 18620199 ~ 18624721 (-)
G177605 NA non-coding upstream 7677 18626289 ~ 18626532 (-)
G177607 NA non-coding upstream 10687 18629299 ~ 18629554 (-)
G177609 NA non-coding upstream 13802 18632414 ~ 18632670 (-)
G177626 NA non-coding upstream 118252 18736864 ~ 18740579 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 83257 18485642 ~ 18531635 (-)
G177568 NA other downstream 211884 18397582 ~ 18403008 (-)
G177526 NA other downstream 440367 18171849 ~ 18174525 (-)
stoml2 stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 other downstream 2824248 15780555 ~ 15790644 (-)
LOC111194989 NA other downstream 3049429 15528296 ~ 15565463 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other upstream 268416 18887028 ~ 18934600 (-)
G177704 NA other upstream 472534 19091146 ~ 19092146 (-)
LOC103035567 LOC103035567,LOC108425166 other upstream 501174 19119786 ~ 19128123 (-)
LOC111194984 sh2d4a other upstream 1120037 19738649 ~ 19739313 (-)
G178173 NA other upstream 2672910 21291522 ~ 21295833 (-)

Expression


Co-expression Network