G177685


Basic Information

Item Value
gene id G177685
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19110161 ~ 19159146 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240700
tgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagtgtgtgtggaaagTTGTGGGGTTGTTATGATGTTATATTACCGTGTTGGgttataatattatgggatggtgtaaatatatttgcaCAGGTTCAgcttcactttttctttttttgggacAAGGTTCAGATTGGGGTGGGGATTTGGTGGGGGTGGGGTTTTGACAGGGGGCGGGACTAGAGCTGTTTGTGTGCTTCTTACTTTATGTTCCTGTTTGCTACAAAACTgattataatgattattatgGGAATATTATGTGAATACTCAGTGGAGACCCTTTGGCCCCGCCCACACGCATCGTGATACTataaactggatttttttttgcgaaCGCTCTCAAGGGTGGAGGCTTTATGAACTGTTTTGCGTGTTCAGGTACCTGATCATTTCACCAGTCATATATTGTTCTGAGGTAGTAAAAAATTATCTAATCGTGTGGGCGGGGATACGCTGTGTTCCATTTAAACTAAACTCGGATGTTAAAAAACTCCACATAGAAAATTTCAACCTATAGTCCTATAGTTCGGATTTCATTAAGAATCCGGTGGACCTGTTTCTGCTTTGGTGGAGAAGAAGACTGTAACATGTGAAAAATATTCTGGTTAGATGTTAGCGCTGTGTATTAGTAATACAATATGTATCACAATGCAGGGATAGCttttcaatatattgtgatactgtaagcaaggtgatATTGCAATAGTTTGAAtcaaattttaggaaaaaaaacgaccgtagtaaagaaaaagtaaaacacTACTACCTTGTGGTTGGAATATGAACACAACAccaaatgaaccacttctgacaacAGTCTTTACTAATCTGAAGTAAGGATTAAAattatttactgtgtttttgagaatcaaTACAGCGTTGTTGAACATAATATTTCAATTTGAAATTGATTGTCCCTTAAACATCTTTAGATTCAAGAAAACTAGTAAATGAGTGTAAACTAGTGTTAAACTAAGGAAATGTTTagaaattgtgtaaaattactaGAATTCTTTAACAGGAGCTTTATCAACTGGGAAGTGACATTATTTCTAAATTCATATTCCGAGTTAAATGGAACACAGCATGGCTTGTAAAGGTGGTGCAGTCTCTTTATCAGACTGTTCATTTTTCTCCACTGTAAAAGTCTTGGCTGTTTCAGACAAAAGGAGACTAAACTGATTTGTATGAAAGGAGAAAAAATGAGGTTTTTTGGACATTTTGACAATCATTTTGGAACTGTTTGGCTTTATGTGGGCTGGACTCGCGACGGCACAAAAACCTGAACCATGGATctcccctcttcctctctcgaCGGTTCTGTTCGCTGTCCATCACCCGTCCTCCTGTTTCACTGCCCAACCAGCACCACGGACAGTCGTCAGCTGAACATCCTGGTCCTGCCTCCTTCCGAGCAAGGGCGGGGCGGGCGGAGTCGCTAATCGAGTTTTTAAAGTTCTGTAGCTGCTGTGCATGTTTTGGCTCTTCGGGCATGTAGACTTTTATTCTGTCCAGTTTTACTCTGACCACACCTCCTATCCCCATAACCCCAATCCCCGACCCACGCCCTCAACCACAACCTCCTGCTGAAACATTAGAAGTAGATCATTCGTAGTGCAACCAGAAAACCatgttttgtgtaaaaatagtaCAGTTTTAatctcctgttttttaatgtaaaatgtttttatttgttaagtTTTGTTTAGGGGCGGGATTTACTCTGATGTAGATGTACATCTAATCAAAAGCCAAATAAAACTCCAGTGAAGCACAGTAAAGGCCACACTGAGCAC

Function

GO: NA

KEGG:

id description
ko00562 Inositol phosphate metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU240700 True 1835 lncRNA 0.40 2 19110161 19159146

Neighbor

gene id symbol gene type direction distance location
LOC103047211 LOC108425134 coding downstream 4025 19099862 ~ 19106136 (-)
rhof rhof,LOC108425170,LOC105014892,LOC106568222 coding downstream 37632 19063550 ~ 19072529 (-)
LOC103031534 NA coding downstream 53909 19052991 ~ 19056252 (-)
LOC103030174 NA coding downstream 61825 19038310 ~ 19048336 (-)
LOC103029848 ggt1 coding downstream 104300 18994874 ~ 19005861 (-)
LOC103047514 NA coding upstream 23103 19182249 ~ 19185669 (-)
inip inip,LOC107658659,LOC107558675,LOC107571239 coding upstream 51734 19210880 ~ 19213378 (-)
lin54 lin54,LOC107744261 coding upstream 60688 19219834 ~ 19235608 (-)
plac8 plac8 coding upstream 86856 19246002 ~ 19249795 (-)
srek1ip1 srek1ip1,LOC107658680,LOC107744254,LOC107685105,LOC107713259 coding upstream 96943 19256089 ~ 19259917 (-)
G177688 NA non-coding downstream 31827 19075375 ~ 19078334 (-)
LOC103033103 NA non-coding downstream 32185 19077571 ~ 19077976 (-)
LOC111195061 NA non-coding downstream 33245 19075247 ~ 19076916 (-)
G177678 NA non-coding downstream 122746 18983812 ~ 18987415 (-)
G177669 NA non-coding downstream 155221 18950852 ~ 18954940 (-)
G177728 actr1b,actr1,LOC108425179,LOC103036907,LOC107588989,LOC107658603,LOC107602067,LOC106563059 non-coding upstream 2471 19161617 ~ 19164767 (-)
G177729 acty,LOC103036907,LOC108425179,LOC107658603,LOC106563059,LOC107588989 non-coding upstream 6944 19166090 ~ 19168529 (-)
G177742 kiaa1958 non-coding upstream 41403 19200549 ~ 19202732 (-)
G177735 NA non-coding upstream 55160 19214306 ~ 19216110 (-)
G177734 NA non-coding upstream 57969 19217115 ~ 19219395 (-)
G177704 NA other downstream 18015 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 175561 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 491549 18614892 ~ 18618612 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 578526 18485642 ~ 18531635 (-)
G177568 NA other downstream 707153 18397582 ~ 18403008 (-)
LOC111194984 sh2d4a other upstream 579503 19738649 ~ 19739313 (-)
G178173 NA other upstream 2132376 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 2774373 21933519 ~ 21933831 (-)
G178426 NA other upstream 3296351 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 3342172 22501318 ~ 22509783 (-)

Expression


Co-expression Network