G177728 (actr1b,actr1,LOC108425179,LOC103036907,LOC107588989,LOC107658603,LOC107602067,LOC106563059)


Basic Information

Item Value
gene id G177728
gene name actr1b,actr1,LOC108425179,LOC103036907,LOC107588989,LOC107658603,LOC107602067,LOC106563059
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19161617 ~ 19164767 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240765
cacacacacacacaaacacacacacacacctcctcagAGAAGGTCTGGAGCTGCTCTTTGGAGTAAACGTACTGCCAGATCCGCTCCATATCATTCCAGTCCTTAACGATGCCGTGTTCCATTGGATAGCGCACAGACAGCAGCCCCCTGTGCTCCTCAGCTTTCGGACCGATGAAGAGGTCCCCCTCCAGAGCTCCAGCCATCACACGCACATGTTTAGGTCGTCCCACATAATTTGGGAAGCAGTATTTGGGAATCTGGTCTCCGGCAAATCCGGCTTTGATGGCTCCAGATCCATTATCGATCACCACCGGCTGATTAGCGATTATATCATAGGATTCCATGCTGAACGGGCGGCTCTGCGGCTCCTCGCGCAACTGTTAAAGAGAGAAATCCGCGAGAAATAAAAATTGATAATCATATAAATACTGCAGCTCGCGCACACAGCCGCTCCGCCAACCTACCGCACACTGCTCAACCTAACCCGCGC

Function

symbol description
actr1b Orthologous to several human genes including ACTR1B (actin related protein 1B).
actr1 centractin

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240765 True 490 lncRNA 0.52 4 19161617 19164767

Neighbor

gene id symbol gene type direction distance location
dusp11 NA coding downstream 28239 19129207 ~ 19133378 (-)
dgcr2 dgcr2 coding downstream 39960 19112034 ~ 19121657 (-)
LOC103047211 LOC108425134 coding downstream 55481 19099862 ~ 19106136 (-)
rhof rhof,LOC108425170,LOC105014892,LOC106568222 coding downstream 89088 19063550 ~ 19072529 (-)
LOC103031534 NA coding downstream 105365 19052991 ~ 19056252 (-)
LOC103047514 NA coding upstream 17482 19182249 ~ 19185669 (-)
inip inip,LOC107658659,LOC107558675,LOC107571239 coding upstream 46113 19210880 ~ 19213378 (-)
lin54 lin54,LOC107744261 coding upstream 55067 19219834 ~ 19235608 (-)
plac8 plac8 coding upstream 81235 19246002 ~ 19249795 (-)
srek1ip1 srek1ip1,LOC107658680,LOC107744254,LOC107685105,LOC107713259 coding upstream 91322 19256089 ~ 19259917 (-)
G177685 NA non-coding downstream 2471 19110161 ~ 19159146 (-)
G177717 NA non-coding downstream 14578 19144278 ~ 19147039 (-)
G177688 NA non-coding downstream 83283 19075375 ~ 19078334 (-)
LOC103033103 NA non-coding downstream 83641 19077571 ~ 19077976 (-)
LOC111195061 NA non-coding downstream 84701 19075247 ~ 19076916 (-)
G177729 acty,LOC103036907,LOC108425179,LOC107658603,LOC106563059,LOC107588989 non-coding upstream 1323 19166090 ~ 19168529 (-)
G177742 kiaa1958 non-coding upstream 35782 19200549 ~ 19202732 (-)
G177735 NA non-coding upstream 49539 19214306 ~ 19216110 (-)
G177734 NA non-coding upstream 52348 19217115 ~ 19219395 (-)
G177746 cops4,csn4,LOC106562268 non-coding upstream 72584 19237351 ~ 19240764 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 33494 19119786 ~ 19128123 (-)
G177704 NA other downstream 69471 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 227017 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 543005 18614892 ~ 18618612 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 629982 18485642 ~ 18531635 (-)
LOC111194984 sh2d4a other upstream 573882 19738649 ~ 19739313 (-)
G178173 NA other upstream 2126755 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 2768752 21933519 ~ 21933831 (-)
G178426 NA other upstream 3290730 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 3336551 22501318 ~ 22509783 (-)

Expression


Co-expression Network