G177746 (cops4,csn4,LOC106562268)


Basic Information

Item Value
gene id G177746
gene name cops4,csn4,LOC106562268
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19237351 ~ 19240764 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240795
TGCCAGTGTTATAATACATTTGTACATGAGTACATTATATTATCTTTGCATTAGACAGTGTGCATTCTGCACCTTGTAGTGGATCTGCAGCTGTTCATTGGTTGACTCGTTCTGGAGTAAAGACGCACGATTAATGTAGGCCTCAGCCTGAACAGGATCGTCATCCTCCAGATAAAGGCGGGCAATCTTCAGGTAAGTGTCCAACTTGTAGTCGACATTATACTGTTTCTGTCCTGTCTCCAGAGGTATACCCACTAAAACCTGTGCAGCATTTCTCCAGTCCTCTTCTTTCTCATATATAGTGGCTAGATGCTGTCTGATTGAAGCCACCTGCTCTTCAAAGGAGATAACTCTTGGCTGAATCTTCTCCAGTGTAAAGTGGTAGACAGCTTTAGCTGTGCTGTCGGGTAAATTTGGTAGGTGTGTGCAAAAGTCAGTGAGTAGCTGCCTGGATATCACCAGACTGACATTTTCATTGACCATGGCTTCAACAAATGCTTTCAGTGCCTCCAGTTGTTCTGCATCTGTGAACTGTATTGCCTTATCCAGAATCTGACGATACTTTCCAGCGAGGTCTTTGTGAGATCCGCTGGAGTTCATCAGCTGGGCGAGCTCCTGCCGCACACCGGACGCCATCTTCCCCAATACACAACAACCAGCAGCGCGGAGATCTGATTTCTGACAGGCCGAAGGGCAGCGCACTCTCCACGGGGTACAGCACCACCAAtggccggtgttctgtcgagttgtgctatcttgtcaaaccgtgctaccctcgtgtatatttaactgtaaaaatacaaaagaagcaccatATTACAGCATGTTCACAGTAGAAGTCCCAGTAGATGTCGC

Function

symbol description
cops4 Predicted to be located in nucleus and synaptic vesicle. Predicted to be part of COP9 signalosome. Predicted to be active in cytosol. Is expressed in liver. Orthologous to human COPS4 (COP9 signalosome subunit 4).
csn4 Enables transcription cis-regulatory region binding activity. Involved in several processes, including female germ-line stem cell population maintenance; gamete generation; and protein deneddylation. Part of COP9 signalosome. Is expressed in adult head and organism. Orthologous to human COPS4 (COP9 signalosome subunit 4).

NR:

description
COP9 signalosome complex subunit 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240795 True 855 lncRNA 0.47 5 19237351 19240764

Neighbor

gene id symbol gene type direction distance location
lin54 lin54,LOC107744261 coding downstream 1743 19219834 ~ 19235608 (-)
inip inip,LOC107658659,LOC107558675,LOC107571239 coding downstream 23973 19210880 ~ 19213378 (-)
LOC103047514 NA coding downstream 51682 19182249 ~ 19185669 (-)
LOC103036397 march5l,LOC103036397,LOC108425180,LOC107689266,LOC107718703,LOC107602066,LOC107588990 coding downstream 74844 19158102 ~ 19162507 (-)
dusp11 NA coding downstream 103973 19129207 ~ 19133378 (-)
plac8 plac8 coding upstream 5238 19246002 ~ 19249795 (-)
srek1ip1 srek1ip1,LOC107658680,LOC107744254,LOC107685105,LOC107713259 coding upstream 15325 19256089 ~ 19259917 (-)
adamts6 adamts6,LOC107685101,LOC107713302,LOC107744255 coding upstream 117358 19358122 ~ 19430590 (-)
trim23 trim23,LOC107658681 coding upstream 208981 19449745 ~ 19458441 (-)
sgtb sgtb,LOC107667268,LOC107558703,LOC107548671,LOC107705058 coding upstream 235564 19476328 ~ 19507826 (-)
G177734 NA non-coding downstream 17956 19217115 ~ 19219395 (-)
G177735 NA non-coding downstream 21241 19214306 ~ 19216110 (-)
G177742 kiaa1958 non-coding downstream 34619 19200549 ~ 19202732 (-)
G177729 acty,LOC103036907,LOC108425179,LOC107658603,LOC106563059,LOC107588989 non-coding downstream 68822 19166090 ~ 19168529 (-)
G177728 actr1b,actr1,LOC108425179,LOC103036907,LOC107588989,LOC107658603,LOC107602067,LOC106563059 non-coding downstream 72584 19161617 ~ 19164767 (-)
G177751 cwc27,LOC107744252,LOC107713303 non-coding upstream 20257 19261021 ~ 19266467 (-)
G177762 NA non-coding upstream 100778 19341542 ~ 19341849 (-)
G177770 NA non-coding upstream 157184 19397948 ~ 19401691 (-)
G177766 NA non-coding upstream 207004 19447768 ~ 19449065 (-)
G177769 trappc13,LOC107667267 non-coding upstream 230358 19471122 ~ 19472634 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 109228 19119786 ~ 19128123 (-)
G177704 NA other downstream 145205 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 302751 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 618739 18614892 ~ 18618612 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 705716 18485642 ~ 18531635 (-)
LOC111194984 sh2d4a other upstream 497885 19738649 ~ 19739313 (-)
G178173 NA other upstream 2050758 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 2692755 21933519 ~ 21933831 (-)
G178426 NA other upstream 3214733 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 3260554 22501318 ~ 22509783 (-)

Expression


Co-expression Network