G177751 (cwc27,LOC107744252,LOC107713303)


Basic Information

Item Value
gene id G177751
gene name cwc27,LOC107744252,LOC107713303
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19261021 ~ 19266467 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240800
TAAACATTCATTTCTTATCTGCACAGCTGACTGTTAAATCATTAAGGGGCAGTTTCCTATAGTGGGAATTAATCCTAGTCTACACTCCAGAGTGTGCCATGTTCTTACCTGCGActgctcttcttttctctctcctcgcCAACCTCAGCTTTCTCTTCTCCCACTTTTCCTTTCTTCAGTTTGTTTGAGATGCGGTCTCTCATTTCCTTTCTCCTCAGAGCTGCATCCTCATCGTCTTCGTCATCCTCGTCTCTATCTTTCATTTCATCATCTTCCTCTGAATTTTCCCCTCTTCCTTCaggacctgtttttCTGTCAACAACCGGTACTGAGCTCAACTTCGGATCGTCCTTTAGAAGGTCGTGACTGCTTTTGCTTTTCCCCTTCATTGTCTGGCTGACTTGAGTGACcatttcctcttcctcttctgccTCCTCACCAAACGAGAGCAAGCTGAAATTTTTTGTTGCCTTAGACTGAGATTTCTTTGTCTCCTCTTTGGATTTCTCTTTCTTGCCTTTTATTTCACGAGGCTCAATGTCATCAAACGGAGAATGTAAAACCTCTGTAGATCGGATTTTGTGGGGATTTAGCGGCCGCTCGTTACTGTCACACTCCACCTCTGCCAACCGTAACATGTTATACACTGTGTCTCCTGTGACCTTTCCAAAAATGGTGTGCTTGTTATTGAGCTCATCAGCCCGTCCCAGTGTGAAGAAGAACTGGCTTCCATTATCGTGTGGTCCTGCATTTGCCATGGCCACCAAACCTCTCCTGTTGAACCGTAATCTGGAGTGAAACTCGTCCTTGAAAGGACGGCCATAGATAGACTCCCCTCCAGTTCCAGTGCCGGTGGGATCACCCCCCTGGATAATAAATTCTGGCACAACACGATGGAATATGGTCCCATTGTAGTAACCTTCCATGCACAGCTGAGTGAAGTTTCTGCAGGCTTTGGGAGCTTCTTTGGACCACAGCTCCACATCAATATCACCTGCAGAGGTCTTAATTAAAAcCTTGCCACTAGTCGGAGGCTCCTGGATGTATATGTTGCTCATGTTTGAAGCAGTATTAGTAGGACGCCAGCTAccgtactgaaaaaaaaacgataatAAACGGCTAAAAAACTcgcataaacataaaatatcacTCTAATAAATCCTGTACACCGCCGCCAGCTTAGACTTCTCCTTCTTTAACATCCTGActgggggaaaaacactgctaaCCGCACTGCTGCCACCTAAAGCTAGCGAACCAACCTACAGTTCAGAGGCCCAAGATAGTtatgccagagaatctctataatAGCAAGGTTTGTTTAACCACCAGAGGGCGCACCCAAGTgagtttactgtagaaaatataaaatatacaggtgagttctatatattttattagcaAAATACACTATTCCGACTTccaaaattaaatgaatgtaccgg

Function

symbol description
cwc27 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein peptidyl-prolyl isomerization. Predicted to act upstream of or within protein folding. Predicted to be located in nucleus. Predicted to be part of U2-type precatalytic spliceosome. Orthologous to human CWC27 (CWC27 spliceosome associated cyclophilin).

NR:

description
PREDICTED: collagen alpha-1(XI) chain-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240800 True 1445 lncRNA 0.44 10 19261021 19266467

Neighbor

gene id symbol gene type direction distance location
srek1ip1 srek1ip1,LOC107658680,LOC107744254,LOC107685105,LOC107713259 coding downstream 1104 19256089 ~ 19259917 (-)
plac8 plac8 coding downstream 11226 19246002 ~ 19249795 (-)
lin54 lin54,LOC107744261 coding downstream 25413 19219834 ~ 19235608 (-)
inip inip,LOC107658659,LOC107558675,LOC107571239 coding downstream 47643 19210880 ~ 19213378 (-)
LOC103047514 NA coding downstream 75352 19182249 ~ 19185669 (-)
adamts6 adamts6,LOC107685101,LOC107713302,LOC107744255 coding upstream 91655 19358122 ~ 19430590 (-)
trim23 trim23,LOC107658681 coding upstream 183278 19449745 ~ 19458441 (-)
sgtb sgtb,LOC107667268,LOC107558703,LOC107548671,LOC107705058 coding upstream 209861 19476328 ~ 19507826 (-)
LOC103041684 tjp2 coding upstream 509337 19775804 ~ 19832975 (-)
LOC103023098 LOC108428883,LOC107705047,LOC107667273,LOC107726562,LOC107558698 coding upstream 569165 19835632 ~ 19863882 (-)
G177746 cops4,csn4,LOC106562268 non-coding downstream 20257 19237351 ~ 19240764 (-)
G177734 NA non-coding downstream 41626 19217115 ~ 19219395 (-)
G177735 NA non-coding downstream 44911 19214306 ~ 19216110 (-)
G177742 kiaa1958 non-coding downstream 58289 19200549 ~ 19202732 (-)
G177729 acty,LOC103036907,LOC108425179,LOC107658603,LOC106563059,LOC107588989 non-coding downstream 92492 19166090 ~ 19168529 (-)
G177762 NA non-coding upstream 75075 19341542 ~ 19341849 (-)
G177770 NA non-coding upstream 131481 19397948 ~ 19401691 (-)
G177766 NA non-coding upstream 181301 19447768 ~ 19449065 (-)
G177769 trappc13,LOC107667267 non-coding upstream 204655 19471122 ~ 19472634 (-)
G177779 NA non-coding upstream 223934 19490401 ~ 19490877 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 132898 19119786 ~ 19128123 (-)
G177704 NA other downstream 168875 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 326421 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 642409 18614892 ~ 18618612 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 729386 18485642 ~ 18531635 (-)
LOC111194984 sh2d4a other upstream 472182 19738649 ~ 19739313 (-)
G178173 NA other upstream 2025055 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 2667052 21933519 ~ 21933831 (-)
G178426 NA other upstream 3189030 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 3234851 22501318 ~ 22509783 (-)

Expression


Co-expression Network