G177762


Basic Information

Item Value
gene id G177762
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19341542 ~ 19341849 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240816
caaggttcatgtgttgctacattgtatatatttggtccgcttatttttgttttcacactgcagtttagggagcgcaccaaatacctttgtgtgatactcctacatcctttcatcatcacttacgtatcgatgcgttttctGGAAgcgctggacgtccaactccgccttcccgcaggctgcagtcagtagtagttggttatttttcttcttctgctgccgttgttgaggaacgcctgctcagcttcctgtaattggtccgaaagttcgaaccatccagaaaagcgctttcacactgcaggcgaaccgga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240816 True 308 lncRNA 0.47 1 19341542 19341849

Neighbor

gene id symbol gene type direction distance location
srek1ip1 srek1ip1,LOC107658680,LOC107744254,LOC107685105,LOC107713259 coding downstream 81625 19256089 ~ 19259917 (-)
plac8 plac8 coding downstream 91747 19246002 ~ 19249795 (-)
lin54 lin54,LOC107744261 coding downstream 105934 19219834 ~ 19235608 (-)
inip inip,LOC107658659,LOC107558675,LOC107571239 coding downstream 128164 19210880 ~ 19213378 (-)
LOC103047514 NA coding downstream 155873 19182249 ~ 19185669 (-)
adamts6 adamts6,LOC107685101,LOC107713302,LOC107744255 coding upstream 16273 19358122 ~ 19430590 (-)
trim23 trim23,LOC107658681 coding upstream 107896 19449745 ~ 19458441 (-)
sgtb sgtb,LOC107667268,LOC107558703,LOC107548671,LOC107705058 coding upstream 134479 19476328 ~ 19507826 (-)
LOC103041684 tjp2 coding upstream 433955 19775804 ~ 19832975 (-)
LOC103023098 LOC108428883,LOC107705047,LOC107667273,LOC107726562,LOC107558698 coding upstream 493783 19835632 ~ 19863882 (-)
G177751 cwc27,LOC107744252,LOC107713303 non-coding downstream 75075 19261021 ~ 19266467 (-)
G177746 cops4,csn4,LOC106562268 non-coding downstream 100778 19237351 ~ 19240764 (-)
G177734 NA non-coding downstream 122147 19217115 ~ 19219395 (-)
G177735 NA non-coding downstream 125432 19214306 ~ 19216110 (-)
G177742 kiaa1958 non-coding downstream 138810 19200549 ~ 19202732 (-)
G177770 NA non-coding upstream 56099 19397948 ~ 19401691 (-)
G177766 NA non-coding upstream 105919 19447768 ~ 19449065 (-)
G177769 trappc13,LOC107667267 non-coding upstream 129273 19471122 ~ 19472634 (-)
G177779 NA non-coding upstream 148552 19490401 ~ 19490877 (-)
G177783 NA non-coding upstream 167449 19509298 ~ 19555843 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 213419 19119786 ~ 19128123 (-)
G177704 NA other downstream 249396 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 406942 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 722930 18614892 ~ 18618612 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 809907 18485642 ~ 18531635 (-)
LOC111194984 sh2d4a other upstream 396800 19738649 ~ 19739313 (-)
G178173 NA other upstream 1949673 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 2591670 21933519 ~ 21933831 (-)
G178426 NA other upstream 3113648 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 3159469 22501318 ~ 22509783 (-)

Expression


Co-expression Network