G177819


Basic Information

Item Value
gene id G177819
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19739380 ~ 19739598 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240886
aactaattaatagtgctgcattaacacctaaatattttctattaactaccagggagtactgaataattactcagtagatagtactgaactaatgattatagtagttcactattaactccacaataattactgagacttacatatctcctggagaactacttactaatgatgtctcctttataataactacttattaattactgctcaaatcaacattaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240886 True 219 lncRNA 0.29 1 19739380 19739598

Neighbor

gene id symbol gene type direction distance location
erbin erbin,erbb2ip,LOC107667260,LOC107726559,LOC107705051,LOC107742960 coding upstream 87962 19594101 ~ 19651418 (+)
nln nln,LOC107705053,LOC107667266,LOC107548669 coding upstream 217307 19503557 ~ 19522073 (+)
trappc13 trappc13,LOC107667267 coding upstream 264203 19459956 ~ 19475177 (+)
ppwd1 ppwd1 coding upstream 293722 19432487 ~ 19445658 (+)
cwc27 cwc27,LOC102784682 coding upstream 413979 19261204 ~ 19325401 (+)
LOC103023409 co-prmt,LOC108428880 coding downstream 157139 19896737 ~ 19918977 (+)
pum3 pum3,k0020,LOC107705054,LOC107742987 coding downstream 180279 19919877 ~ 19932820 (+)
LOC103030097 NA coding downstream 409660 20149258 ~ 20150118 (+)
LOC103027562 NA coding downstream 412863 20152461 ~ 20155315 (+)
smad2 smad2,LOC107743055,LOC107653131 coding downstream 489929 20229527 ~ 20257745 (+)
LOC111195062 NA non-coding upstream 188360 19526927 ~ 19551020 (+)
G177506 NA non-coding upstream 245006 19494175 ~ 19494374 (+)
G177485 NA non-coding upstream 259538 19411626 ~ 19479842 (+)
G177479 NA non-coding upstream 337699 19397948 ~ 19401681 (+)
G177472 NA non-coding upstream 380631 19353968 ~ 19358749 (+)
G177822 NA non-coding downstream 2026 19741624 ~ 19741851 (+)
G177826 tjp2 non-coding downstream 36242 19775840 ~ 19779536 (+)
G177830 NA non-coding downstream 55546 19795144 ~ 19833110 (+)
G177833 NA non-coding downstream 78635 19818233 ~ 19818710 (+)
LOC107197765 NA non-coding downstream 135768 19875366 ~ 19876390 (+)
LOC111194983 NA other upstream 16820 19720301 ~ 19722560 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other upstream 1180936 18539898 ~ 18558444 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other upstream 1408891 18324873 ~ 18330489 (+)
G177219 NA other upstream 1513247 18224273 ~ 18226133 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other upstream 1564862 18138712 ~ 18174518 (+)
LOC103042206 LOC108428882 other downstream 11344 19750942 ~ 19775791 (+)
LOC103043854 NA other downstream 349640 20089238 ~ 20096711 (+)
G177950 NA other downstream 399224 20138822 ~ 20139564 (+)
ier3ip1 ier3ip1,LOC106633120 other downstream 656779 20396377 ~ 20399165 (+)
LOC103046694 LOC108440723,LOC108277161 other downstream 2387523 22127121 ~ 22315307 (+)

Expression


Co-expression Network