G177826 (tjp2)


Basic Information

Item Value
gene id G177826
gene name tjp2
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19775840 ~ 19779536 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU240894
gtttaaaaacacttttgatTTTCTACATTATCCACTTTCACAGGGAGTCCAGAGCAGAGATCATAATAAAGATACAGAAATCGTACGGACCTACTATTAACCAATCACATTTCCAGTGTATCCAAATATGTATTCAAAAAAGCTGGTATAAAAATTCAGTATATAGTACGGAAATTCAGTAGAATACGCATAAACATGACAAACTGTAGCTGTACCTCTTCCAAAAGCCTTCCAAAAGCTTTTAAGGCAGGTGAACAGAACAGGATAGATCATCTCTTAGATCTCATTCATACATAGAttgtctttttctttatattccaATATTTATAAACTCTCAATAGAGGAAACAATACAGAtactacagatgaataaaatcatttttcagAGATATGTAACAAAATATTCAATAGAACAGTCAATAGAATCAGTGAAGCTACATGAAAATATACACCACGTCTTTCTGtttcatataaaaaacataaaaatataaaaacagaaaaatagagcaTGTTCACTTTTCAGAAAAGGACGGCAGGTAGTGCTATATATGCTCAACTCCACACTCCCCATCCATATTTAATTAATGCATGCTTTCACAAAGCCCTTAGTATACTGAGAGAGGTGATGAATGATAAAGTGTTAAACGTGTAATTTAACAGCAAACTCAGAAGCCAAAACACCATGAGTTAGGGTTCCTGaacagagattaagcctagttttaCAGTAATTGGTGtagcacagtggataacaccaccacttGTCAGTGACCTACCATATTATGTGGGAGACTGCAGTTcaatacaccaataagagtcacGGGCGTCACTCCTAAGACTACATCGGTCCACCTCTGAAATAAGAACAACCTTGTAAGCCACTCTGGATAAGCTAAATtcagctaaaatgctaaaaaatgtaaatgaaaatgtaGTCGTAGACTATAATTTATTCTAATGGAAAATCTACAAATCTCAAAATGCTGGTTAGTccaaaactaggcttaatccctgtctgggaaactggtTCCTAAAGGTCGTACAGAACACACTGATCCAATATTGTCCAACAAACATCAGCATATTCTAGAATTAAAAGTAAAGTTGTTATAGATATTGCATCATTCATATTCTCAAAACTTAGGAACTACCATGCAACTCCAAGCATCCAATGATCTCGAGACATTCAAGGGAAAAAGTCCCTTTTTTATGCTGGATTTTCTTAAAAGGGCATGATTTTCAGAGGTCTGTAATCAAACGTGGGTTTAGAACAGCAACCAAACATTGATTAAAGGTTGCCAGTGTTCGTTGTAAAACACTGGATCAGGTTGTTATGTGCTTATCTAAGCTCCGCCCATAAATGTAAAGTTTCATAGCAACTGATGAAAGATTGGACAAGCTTTTTAATGGTTTTGCAAAAACCTCATTTAATCAAATTGATTATTTATGTTGCTCACAATTGataaataacactaaatattaGAATACAATTTTGCAAAATTTTGCCAAAAAAAGAGGGAGCTACAACAGATTCTCAACAGATTGTTCTGTTAAGGTTGCCCAATCTTGCCATGGTTTCTATGAAAGTACATATTTATTGGTAAAGCAACAATTGGTGAAATTGTAATCACGGAGGCTGCTGGGAGTCCTACAGTTCAGTGTCGTTGTATTTCTGTGGGTTGTAGTAGCCTCTGCGAGTTTGGTCAGACAGCTGACGGCGATAATCTTCCTCGTCATCTTCAGCAGTGGAGCGGTACGGTCCTCGACCCTCCATGTAGGGCGGTTTGGAAGATGAGCCGTGGGATTCAGAGTTCGAACTGGACCCAATAGGTTGTGGTCTGTTCTGGTTGGGCTTGGGTTTGATGGGAACCGCATAAATATCAGGATGCTTCTGGGAGATTTCCAGCCGTGCATGTTCAGCCTCCTGCAGCTCCAGCATCCTCTGCGCTCGGGCCAGGTGGTCCATCTGCTCAAAGGCCTTCACCTTGCCGAGGAACGAGCGGCTGGCTGGATCTTCTGCGTTTGAGTTTGGTTCCTGGGCCGGAGCGGGTCGACCGGAGAAGCTGGGTTTGAGAGCCACGGGGGGTGGCAGAGGTTTAGAGCTGACGGGGGTGTCGCTGCTCACTGTGCTGCTGGAGTGAGAGTCAAAACTTCTGTTGTCGCTGCTGCGAGTGTGAGATCTCACCTGCAACACAAACAGAGGGGAGGAGTCAATACCTCTGACCACTTCCCATATAAAGAATTCAGCTTCACAGATCAAACATGGCTGATGGACTAAATCGGTCATCAATTTAAA
>TU240896
acagaaaaatagagcaTGTTCACTTTTCAGAAAAGGACGGCAGGTAGTGCTATATATGCTCAACTCCACACTCCCCATCCATATTTAATTAATGCATGCTTTCACAAAGCCCTTAGTATACTGAGAGAGGTGATGAATGATAAAGTGTTAAACGTGTAATTTAACAGCAAACTCAGAAGCCAAAACACCATGAGTTAGGGTTCCTGaacagagattaagcctagttttaCAGTAATTGGTGtagcacagtggataacaccaccacttGTCAGTGACCTACCATATTATGTGGGAGACTGCAGTTcaatacaccaataagagtcacGGGCGTCACTCCTAAGACTACATCGGTCCACCTCTGAAATAAGAACAACCTTGTAAGCCACTCTGGATAAGCTAAATtcagctaaaatgctaaaaaatgtaaatgaaaatgtaGTCGTAGACTATAATTTATTCTAATGGAAAATCTACAAATCTCAAAATGCTGGTTAGTccaaaactaggcttaatccctgtctgggaaactggtTCCTAAAGGTCGTACAGAACACACTGATCCAATATTGTCCAACAAACATCAGCATATTCTAGAATTAAAAGTAAAGTTGTTATAGATATTGCATCATTCATATTCTCAAAACTTAGGAACTACCATGCAACTCCAAGCATCCAATGATCTCGAGACATTCAAGGGAAAAAGTCCCTTTTTTATGCTGGATTTTCTTAAAAGGGCATGATTTTCAGAGGTCTGTAATCAAACGTGGGTTTAGAACAGCAACCAAACATTGATTAAAGGTTGCCAGTGTTCGTTGTAAAACACTGGATCAGGTTGTTATGTGCTTATCTAAGCTCCGCCCATAAATGTAAAGTTTCATAGCAACTGATGAAAGATTGGACAAGCTTTTTAATGGTTTTGCAAAAACCTCATTTAATCAAATTGATTATTTATGTTGCTCACAATTGataaataacactaaatattaGAATACAATTTTGCAAAATTTTGCCAAAAAAAGAGGGAGCTACAACAGATTCTCAACAGATTGTTCTGTTAAGGTTGCCCAATCTTGCCATGGTTTCTATGAAAGTACATATTTATTGGTAAAGCAACAATTGGTGAAATTGTAATCACGGAGGCTGCTGGGAGTCCTACAGTTCAGTGTCGTTGTATTTCTGTGGGTTGTAGTAGCCTCTGCGAGTTTGGTCAGACAGCTGACGGCGATAATCTTCCTCGTCATCTTCAGCAGTGGAGCGGTACGGTCCTCGACCCTCCATGTAGGGCGGTTTGGAAGATGAGCCGTGGGATTCAGAGTTCGAACTGGACCCAATAGGTTGTGGTCTGTTCTGGTTGGGCTTGGGTTTGATGGGAACCGCATAAATATCAGGATGCTTCTGGGAGATTTCCAGCCGTGCATGTTCAGCCTCCTGCAGCTCCAGCATCCTCTGCGCTCGGGCCAGGTGGTCCATCTGCTCAAAGGCCTTCACCTTGCCGAGGAACGAGCGGCTGGCTGGATCTTCTGCGTTTGAGTTTGGTTCCTGGGCCGGAGCGGGTCGACCGGAGAAGCTGGGTTTGAGAGCCACGGGGGGTGGCAGAGGTTTAGAGCTGACGGGGGTGTCGCTGCTCACTGTGCTGCTGGAGTGAGAGTCAAAACTTCTGTTGTCGCTGCTGCGAGTGTGAGATCTCACCTGCAACACAAACAGAGGGGAGGAGTCAATACCTCTGACCACTTCCCATATAAAGAATTCAGCTTCACAGATCAAACATGGCTGATGGACTAAATCGGTCATCAATTTAAA

Function

symbol description
tjp2 Enables protein domain specific binding activity; protein tyrosine kinase binding activity; and protein-macromolecule adaptor activity. Involved in several processes, including establishment of endothelial intestinal barrier; intestinal absorption; and positive regulation of blood-brain barrier permeability. Located in several cellular components, including bicellular tight junction; cell-cell contact zone; and nucleus. Implicated in autosomal dominant nonsyndromic deafness 51; disease of metabolism; and progressive familial intrahepatic cholestasis 4.

NR:

description
PREDICTED: tight junction protein ZO-2 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240894 True 2292 lncRNA 0.40 3 19775840 19779536
TU240896 False 1800 lncRNA 0.43 3 19776332 19779536

Neighbor

gene id symbol gene type direction distance location
erbin erbin,erbb2ip,LOC107667260,LOC107726559,LOC107705051,LOC107742960 coding upstream 124422 19594101 ~ 19651418 (+)
nln nln,LOC107705053,LOC107667266,LOC107548669 coding upstream 253767 19503557 ~ 19522073 (+)
trappc13 trappc13,LOC107667267 coding upstream 300663 19459956 ~ 19475177 (+)
ppwd1 ppwd1 coding upstream 330182 19432487 ~ 19445658 (+)
cwc27 cwc27,LOC102784682 coding upstream 450439 19261204 ~ 19325401 (+)
LOC103023409 co-prmt,LOC108428880 coding downstream 117201 19896737 ~ 19918977 (+)
pum3 pum3,k0020,LOC107705054,LOC107742987 coding downstream 140341 19919877 ~ 19932820 (+)
LOC103030097 NA coding downstream 369722 20149258 ~ 20150118 (+)
LOC103027562 NA coding downstream 372925 20152461 ~ 20155315 (+)
smad2 smad2,LOC107743055,LOC107653131 coding downstream 449991 20229527 ~ 20257745 (+)
G177822 NA non-coding upstream 33989 19741624 ~ 19741851 (+)
G177819 NA non-coding upstream 36242 19739380 ~ 19739598 (+)
LOC111195062 NA non-coding upstream 224820 19526927 ~ 19551020 (+)
G177506 NA non-coding upstream 281466 19494175 ~ 19494374 (+)
G177485 NA non-coding upstream 295998 19411626 ~ 19479842 (+)
G177830 NA non-coding downstream 15608 19795144 ~ 19833110 (+)
G177833 NA non-coding downstream 38697 19818233 ~ 19818710 (+)
LOC107197765 NA non-coding downstream 95830 19875366 ~ 19876390 (+)
G177861 NA non-coding downstream 110731 19890267 ~ 19890713 (+)
LOC111195063 NA non-coding downstream 170060 19949596 ~ 19955474 (+)
LOC103042206 LOC108428882 other upstream 49 19750942 ~ 19775791 (+)
LOC111194983 NA other upstream 53280 19720301 ~ 19722560 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other upstream 1217396 18539898 ~ 18558444 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other upstream 1445351 18324873 ~ 18330489 (+)
G177219 NA other upstream 1549707 18224273 ~ 18226133 (+)
LOC103043854 NA other downstream 309702 20089238 ~ 20096711 (+)
G177950 NA other downstream 359286 20138822 ~ 20139564 (+)
ier3ip1 ier3ip1,LOC106633120 other downstream 616841 20396377 ~ 20399165 (+)
LOC103046694 LOC108440723,LOC108277161 other downstream 2347585 22127121 ~ 22315307 (+)
LOC103025565 scd5 other downstream 2676783 22456319 ~ 22465729 (+)

Expression


Co-expression Network