G177911


Basic Information

Item Value
gene id G177911
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19891534 ~ 19891776 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241023
GACAATTTGGGATCAttaagttcttgacacatatttagttgataataatgtttataagcTTTAGAATATttactggttaaaaaaaaaaaacatggctacaaaaaaaaagcctttcaaTGAAAGGTCCTCTGTTGTACCTcgatataaggtacagccccagcggcaagctttgtactttttttaagcacaaatctgtacttatttttcttagtgtgtagacaaaacataaaaaaatattgagtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241023 True 243 lncRNA 0.30 1 19891534 19891776

Neighbor

gene id symbol gene type direction distance location
LOC103023098 LOC108428883,LOC107705047,LOC107667273,LOC107726562,LOC107558698 coding downstream 27652 19835632 ~ 19863882 (-)
LOC103041684 tjp2 coding downstream 58559 19775804 ~ 19832975 (-)
sgtb sgtb,LOC107667268,LOC107558703,LOC107548671,LOC107705058 coding downstream 383708 19476328 ~ 19507826 (-)
trim23 trim23,LOC107658681 coding downstream 433093 19449745 ~ 19458441 (-)
adamts6 adamts6,LOC107685101,LOC107713302,LOC107744255 coding downstream 460944 19358122 ~ 19430590 (-)
kcnv2 kcnv2,kcnv2a,LOC108428855,LOC107558705,LOC107667263,LOC107726563 coding upstream 46919 19938695 ~ 19942763 (-)
vldlr vldlr,LOC107548665,LOC107705052,LOC107558669 coding upstream 53994 19945770 ~ 19985210 (-)
sh3bp2 sh3bp2 coding upstream 102546 19994322 ~ 20033939 (-)
LOC103028513 NA coding upstream 215163 20106939 ~ 20109161 (-)
LOC103030413 NA coding upstream 238828 20130604 ~ 20142570 (-)
G177902 NA non-coding downstream 23634 19865415 ~ 19867900 (-)
G177821 NA non-coding downstream 150979 19740206 ~ 19740555 (-)
G177814 NA non-coding downstream 160521 19730751 ~ 19731013 (-)
G177811 NA non-coding downstream 161789 19729136 ~ 19729745 (-)
G177809 NA non-coding downstream 167235 19723131 ~ 19724299 (-)
G177910 NA non-coding upstream 98669 19990445 ~ 19995781 (-)
G177967 NA non-coding upstream 223898 20115674 ~ 20119161 (-)
G178014 smad2,LOC107743055,LOC107653131,LOC101470473,LOC101159109 non-coding upstream 343915 20235691 ~ 20257726 (-)
G178030 NA non-coding upstream 395254 20287030 ~ 20287342 (-)
G178036 NA non-coding upstream 439441 20331217 ~ 20332128 (-)
LOC111194984 sh2d4a other downstream 152221 19738649 ~ 19739313 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 763411 19119786 ~ 19128123 (-)
G177704 NA other downstream 799388 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 956934 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 1272922 18614892 ~ 18618612 (-)
G178173 NA other upstream 1399746 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 2041743 21933519 ~ 21933831 (-)
G178426 NA other upstream 2563721 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 2609542 22501318 ~ 22509783 (-)
G178450 NA other upstream 2780356 22672132 ~ 22672683 (-)

Expression


Co-expression Network