G177950


Basic Information

Item Value
gene id G177950
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20138822 ~ 20139564 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241070
CTGAACTCAGAGCTTCAGGAAGATCTCCTTCAGTGTGATGTATTGATTTGTCGTGCTGTGATGTTGTAGTCAATAAAACCTTCTTCGCTTTTGTAACCAGCTTGGCTGTTGTCTGTTTAACGGCTGAAGTGGAGGGCTGAGTTGTAGTTGAGATTTTAGGGCTTTCAGTAATGGAACCTGTGTTGTTTGTAGTTAAATTAGAGAAAGATGTTGTGGAGTTCACTGCTGCAGGTCCTGCTGTTGTCATATTTCCAGTCTGTGGAGATGAATAGTTTGATGTGGTTTGATTTACAGATGTTACAGCAGTTGTCACGTTtgattgtgttgttgctgtggAGCCATTGTTTGATGCGTTTAAGGTGGTACTTCCGGTTGTCTGTGAACTAGTCTTGGGGATGGCACTGGCCGTTGTAGGTGCTAGCGTTGTAGTTGAGGTGTTTGAGGAGGAGGAAGCAGATGTTGGTTTGAAGGCCGCAGTTGTGGAGTTGGTTTCAGATTCATTTCTCTTCGGTGAAGAAGTTACTGTAGATGAGTTGTCAGGAGAAGCTGGTTTTAGTGGTGTTGTAAATGATGCAGTtgaagatggcGATGGTGTGGATTTCGGGTTCACAGTTTCAGCCCCACATGTCCTACTGATCATCAAAccttaaaaaatataacatacaAATTAACACCAACATTAAAGCTCTGAAATCTGAAGATTCTCTCAGTCTCTTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241070 True 719 TUCP 0.43 2 20138822 20139564

Neighbor

gene id symbol gene type direction distance location
pum3 pum3,k0020,LOC107705054,LOC107742987 coding upstream 206002 19919877 ~ 19932820 (+)
LOC103023409 co-prmt,LOC108428880 coding upstream 219845 19896737 ~ 19918977 (+)
erbin erbin,erbb2ip,LOC107667260,LOC107726559,LOC107705051,LOC107742960 coding upstream 487404 19594101 ~ 19651418 (+)
nln nln,LOC107705053,LOC107667266,LOC107548669 coding upstream 616749 19503557 ~ 19522073 (+)
trappc13 trappc13,LOC107667267 coding upstream 663645 19459956 ~ 19475177 (+)
LOC103030097 NA coding downstream 9694 20149258 ~ 20150118 (+)
LOC103027562 NA coding downstream 12897 20152461 ~ 20155315 (+)
smad2 smad2,LOC107743055,LOC107653131 coding downstream 89963 20229527 ~ 20257745 (+)
skor2 skor2,LOC107743073,LOC107653123,LOC107738854,LOC107558682 coding downstream 242125 20381689 ~ 20395156 (+)
hdhd2 hdhd2,LOC107738843,LOC107743237 coding downstream 263930 20403494 ~ 20407568 (+)
LOC111195064 NA non-coding upstream 14974 20105334 ~ 20123848 (+)
G177940 NA non-coding upstream 38020 20100576 ~ 20100802 (+)
G177885 NA non-coding upstream 143655 19990644 ~ 19995167 (+)
LOC111195063 NA non-coding upstream 183348 19949596 ~ 19955474 (+)
G177861 NA non-coding upstream 248109 19890267 ~ 19890713 (+)
G177955 NA non-coding downstream 18283 20157847 ~ 20163869 (+)
G177976 NA non-coding downstream 31721 20171285 ~ 20173721 (+)
G177995 NA non-coding downstream 60200 20199764 ~ 20203551 (+)
G177984 NA non-coding downstream 96653 20236217 ~ 20240919 (+)
G178026 NA non-coding downstream 122322 20261886 ~ 20262774 (+)
LOC103043854 NA other upstream 42111 20089238 ~ 20096711 (+)
LOC103042206 LOC108428882 other upstream 363031 19750942 ~ 19775791 (+)
LOC111194983 NA other upstream 416262 19720301 ~ 19722560 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other upstream 1580378 18539898 ~ 18558444 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other upstream 1808333 18324873 ~ 18330489 (+)
ier3ip1 ier3ip1,LOC106633120 other downstream 256813 20396377 ~ 20399165 (+)
LOC103046694 LOC108440723,LOC108277161 other downstream 1987557 22127121 ~ 22315307 (+)
LOC103025565 scd5 other downstream 2316755 22456319 ~ 22465729 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other downstream 2347259 22486823 ~ 22491503 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other downstream 2353876 22493440 ~ 22502159 (+)

Expression


Co-expression Network