G177967


Basic Information

Item Value
gene id G177967
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20115674 ~ 20119161 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241095
AGTCACAGTGCATCTCTGTAAAACTAATgcattttctgattttctgatcaCAGCTGAAGAAAGCTGCAGAGACTGACGAGGAGTATCTGAATGTTGGCAGTTTGAGATACCTCCGCCAGCCTCTGGCTCAGCAAGCCACTGACGAGCTTTTAACGTACGCCTACCCGTCCCCCCGCCTGGAGTACTACAACTTATATGACTTCACCTCCCTCGGCACCGTTCCCATCAACAATCCAATCCTTAACCCGTTCTATAACCCATACGACCCTCAGGTATACACAAACTACCCCCAAAACTATCCCCTGTTTAACCAGGGGCAAGCTAGTCCTCTGATCATCACCTTGAGAAACCTGCCTTGATCAATTCATCTGTCAGACCTctgattcttctcttcactgctgaaactgagactaagTCCAATCATGTTAAtatgagctaaaggctaaagctgttgccatgtgggtcagccagacgtcttcctgtaacagttttctccagtttacaaGAGTCTTTtaaaaggtgtaggaaacagaaCTCTCCGCTCTCTAAAAATGATTACATTTGTCATAATAACATGATTATAATGGTGATAAAGAAATTTCCCATGTcactggcttcatctgtaatttattttctaaagaaaagatttatagttttaagagttatctgtgtttctgtgtctaaGTCTTTATAACAGACAGGCTTTGgaaattctatatatatattttttcatttatttccaaagatcagtttatttccattgttagTGACCAGCTGTAAGGTGTGAACCAattacctttttcttttttcacaatatacaaatgttttcatgttttttttttttttaatattaatttttctctcattttttgttcattttttcctTCAAGCCCTGGCActaacttttgttttatttaaatttactgGATTTTGTACAATTTCAGGTTAATCATTAAACCTGAAGAGGTTAAtgattaaatggcaaaaaatgacaaacttttgactgacagTGTACATGTATTTAAGCAACATTTTAATGCTTTCCTttcataatgcattcataatgctttaatgctttaatgcttTCTGCTAACGTGTAGatgtgtaaaattattttaatacttttaatacttGTAATGACCCACCCAGAGGTGTTGCTGTCTGGGATCATACATGCGAAAGGATTAAAAGTGACTATATGTTAAAAGGTTATACCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241095 True 1218 lncRNA 0.36 2 20115674 20119161

Neighbor

gene id symbol gene type direction distance location
LOC103028513 NA coding downstream 6513 20106939 ~ 20109161 (-)
sh3bp2 sh3bp2 coding downstream 81735 19994322 ~ 20033939 (-)
vldlr vldlr,LOC107548665,LOC107705052,LOC107558669 coding downstream 130464 19945770 ~ 19985210 (-)
kcnv2 kcnv2,kcnv2a,LOC108428855,LOC107558705,LOC107667263,LOC107726563 coding downstream 172911 19938695 ~ 19942763 (-)
LOC103023098 LOC108428883,LOC107705047,LOC107667273,LOC107726562,LOC107558698 coding downstream 251792 19835632 ~ 19863882 (-)
LOC103030413 NA coding upstream 11443 20130604 ~ 20142570 (-)
LOC111195065 NA coding upstream 38664 20157825 ~ 20163900 (-)
LOC103029774 NA coding upstream 49615 20168776 ~ 20218194 (-)
LOC103029139 NA coding upstream 99841 20219002 ~ 20228294 (-)
katnal2 katnal2,LOC107573073,LOC102797751,LOC104955398 coding upstream 289200 20408361 ~ 20420818 (-)
G177910 NA non-coding downstream 119893 19990445 ~ 19995781 (-)
G177911 NA non-coding downstream 223898 19891534 ~ 19891776 (-)
G177902 NA non-coding downstream 247774 19865415 ~ 19867900 (-)
G177821 NA non-coding downstream 375119 19740206 ~ 19740555 (-)
G177814 NA non-coding downstream 384661 19730751 ~ 19731013 (-)
G178014 smad2,LOC107743055,LOC107653131,LOC101470473,LOC101159109 non-coding upstream 116530 20235691 ~ 20257726 (-)
G178030 NA non-coding upstream 167869 20287030 ~ 20287342 (-)
G178036 NA non-coding upstream 212056 20331217 ~ 20332128 (-)
G178069 NA non-coding upstream 277222 20396383 ~ 20399146 (-)
G178086 NA non-coding upstream 460543 20579704 ~ 20581712 (-)
LOC111194984 sh2d4a other downstream 376361 19738649 ~ 19739313 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 987551 19119786 ~ 19128123 (-)
G177704 NA other downstream 1023528 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 1181074 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 1497062 18614892 ~ 18618612 (-)
G178173 NA other upstream 1172361 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 1814358 21933519 ~ 21933831 (-)
G178426 NA other upstream 2336336 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 2382157 22501318 ~ 22509783 (-)
G178450 NA other upstream 2552971 22672132 ~ 22672683 (-)

Expression


Co-expression Network