G177976


Basic Information

Item Value
gene id G177976
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20171285 ~ 20173721 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241106
CTCATCCTCAGAAGCACCGCAGCCACGATGACGATACCCAGGATGAAGAGCACAGACAGGACAACAGAAGAACTTCTGGATCCTCCCACCTCACAGAACGTCCCGCTGTAACCCTGCACACACCTGCAGCTCTGCTCCCCCTCCTGTATCACACACTGCCCTCGGCCGTTACACAGATCAGAGTCGCAGGACTGACCACTCAGCGTTCGGACCAATATGTCGTCCTGAGGGACAGAGACACCCTGCGAGCCTGAGGATGAgggctgaggaggaggaggtctgTGTTTGAAGCCTTGATAGGTGTTCAGGTATGCACCTGAATCCTCTTCATCTGATCCATCCGGGCAGTCGGAGATGTGATCACAGAATTTGCTGCTGGACAGACACTCATGCCCATTCCTGCATGGTTTACTTCCCGCTGGGCACTCCAGAGTGGCCACACATTGGGTCTTGCTCACGACGAGGTAGCCCTGAGTACAGCGGCATGTACGCCCACCAGGGTTCGCCAGACACAGCTGGCTGCAGCCCCCATTGTTCTCAGCACAGAGGTTGGATCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241106 True 558 lncRNA 0.57 2 20171285 20173721

Neighbor

gene id symbol gene type direction distance location
LOC103027562 NA coding upstream 15970 20152461 ~ 20155315 (+)
LOC103030097 NA coding upstream 21167 20149258 ~ 20150118 (+)
pum3 pum3,k0020,LOC107705054,LOC107742987 coding upstream 238465 19919877 ~ 19932820 (+)
LOC103023409 co-prmt,LOC108428880 coding upstream 252308 19896737 ~ 19918977 (+)
erbin erbin,erbb2ip,LOC107667260,LOC107726559,LOC107705051,LOC107742960 coding upstream 519867 19594101 ~ 19651418 (+)
smad2 smad2,LOC107743055,LOC107653131 coding downstream 55806 20229527 ~ 20257745 (+)
skor2 skor2,LOC107743073,LOC107653123,LOC107738854,LOC107558682 coding downstream 207968 20381689 ~ 20395156 (+)
hdhd2 hdhd2,LOC107738843,LOC107743237 coding downstream 229773 20403494 ~ 20407568 (+)
galt galt,LOC107653127,LOC107667272 coding downstream 255041 20428762 ~ 20578785 (+)
LOC103022731 cntfr,LOC107554853,LOC107756542,LOC107738850,LOC107554231 coding downstream 668316 20842037 ~ 21177458 (+)
G177955 NA non-coding upstream 7416 20157847 ~ 20163869 (+)
LOC111195064 NA non-coding upstream 47437 20105334 ~ 20123848 (+)
G177940 NA non-coding upstream 70483 20100576 ~ 20100802 (+)
G177885 NA non-coding upstream 176118 19990644 ~ 19995167 (+)
LOC111195063 NA non-coding upstream 215811 19949596 ~ 19955474 (+)
G177995 NA non-coding downstream 26043 20199764 ~ 20203551 (+)
G177984 NA non-coding downstream 62496 20236217 ~ 20240919 (+)
G178026 NA non-coding downstream 88165 20261886 ~ 20262774 (+)
G178029 NA non-coding downstream 113351 20287072 ~ 20287579 (+)
G178035 NA non-coding downstream 157513 20331234 ~ 20332003 (+)
G177950 NA other upstream 31721 20138822 ~ 20139564 (+)
LOC103043854 NA other upstream 74574 20089238 ~ 20096711 (+)
LOC103042206 LOC108428882 other upstream 395494 19750942 ~ 19775791 (+)
LOC111194983 NA other upstream 448725 19720301 ~ 19722560 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other upstream 1612841 18539898 ~ 18558444 (+)
ier3ip1 ier3ip1,LOC106633120 other downstream 222656 20396377 ~ 20399165 (+)
LOC103046694 LOC108440723,LOC108277161 other downstream 1953400 22127121 ~ 22315307 (+)
LOC103025565 scd5 other downstream 2282598 22456319 ~ 22465729 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other downstream 2313102 22486823 ~ 22491503 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other downstream 2319719 22493440 ~ 22502159 (+)

Expression


Co-expression Network