G178026


Basic Information

Item Value
gene id G178026
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20261886 ~ 20262774 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241183
ggccagttgttcaaaggtaatctgatcggattttggttatcggattggatcaaatctggaaaacgggttgttcaaaagggaaagaagcattctgaaatcggatcagatcacgtaatccaatcctagtttgtaaatggatcaaaccttcagtttctgttgttcaaaacttttcagtaggatttggataactttgatccaaaaaacaggattaccctgatcccaacaaggggTAGGATTTCAAGGGGGATTTCAGgaagtaaatgtggtaaaactttaaaatcaaagttttaaagtaaaaaaaaaaatacatttgtacaatttagtgtatatacatttacttctattttgcacttgacctgtttaaccgttacagtaataaagtagacattggctaccaattaagccttttactatagtaacgtaaaaataaaaacaatcttgaccccattaaataaaccccccaaaagatttcaataacaaacaaaaataatatattcattttttcatctacgtcactgtcattcatcactgtatattaatgtcaaagaaacatttatcagatatgaagctgtcaaaaataatttcgaacaattgcaaagaacaccagagtttgttctggttcttcaacaggctcaggtgcatcatgaacatcacagagagggacattgcgtctggtagcaacattgggcaggacaatacatgcaagtgttatgttgcatgctCCCTGTGGTTCGACTCGCAAATAGTTAAGGCATGCAAAGCGTCTCTGCAGAATGCTTAATTGctcgtattgttttgcaataagcagtatcttgttactgcaagaaaaggagtcatcaacccctgttggttcttctatctgttttttacatagctggtaatccagatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241183 True 889 lncRNA 0.36 1 20261886 20262774

Neighbor

gene id symbol gene type direction distance location
smad2 smad2,LOC107743055,LOC107653131 coding upstream 4141 20229527 ~ 20257745 (+)
LOC103027562 NA coding upstream 106571 20152461 ~ 20155315 (+)
LOC103030097 NA coding upstream 111768 20149258 ~ 20150118 (+)
pum3 pum3,k0020,LOC107705054,LOC107742987 coding upstream 329066 19919877 ~ 19932820 (+)
LOC103023409 co-prmt,LOC108428880 coding upstream 342909 19896737 ~ 19918977 (+)
skor2 skor2,LOC107743073,LOC107653123,LOC107738854,LOC107558682 coding downstream 118915 20381689 ~ 20395156 (+)
hdhd2 hdhd2,LOC107738843,LOC107743237 coding downstream 140720 20403494 ~ 20407568 (+)
galt galt,LOC107653127,LOC107667272 coding downstream 165988 20428762 ~ 20578785 (+)
LOC103022731 cntfr,LOC107554853,LOC107756542,LOC107738850,LOC107554231 coding downstream 579263 20842037 ~ 21177458 (+)
LOC103023250 NA coding downstream 940488 21203262 ~ 21258587 (+)
G177984 NA non-coding upstream 20967 20236217 ~ 20240919 (+)
G177995 NA non-coding upstream 58335 20199764 ~ 20203551 (+)
G177976 NA non-coding upstream 88165 20171285 ~ 20173721 (+)
G177955 NA non-coding upstream 98017 20157847 ~ 20163869 (+)
LOC111195064 NA non-coding upstream 138038 20105334 ~ 20123848 (+)
G178029 NA non-coding downstream 24298 20287072 ~ 20287579 (+)
G178035 NA non-coding downstream 68460 20331234 ~ 20332003 (+)
G178055 sigmar1,LOC107573076,LOC107653128 non-coding downstream 158595 20421369 ~ 20424714 (+)
G178088 NA non-coding downstream 339677 20602451 ~ 20602789 (+)
G178091 NA non-coding downstream 362005 20624779 ~ 20625028 (+)
G177950 NA other upstream 122322 20138822 ~ 20139564 (+)
LOC103043854 NA other upstream 165175 20089238 ~ 20096711 (+)
LOC103042206 LOC108428882 other upstream 486095 19750942 ~ 19775791 (+)
LOC111194983 NA other upstream 539326 19720301 ~ 19722560 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other upstream 1703442 18539898 ~ 18558444 (+)
ier3ip1 ier3ip1,LOC106633120 other downstream 133603 20396377 ~ 20399165 (+)
LOC103046694 LOC108440723,LOC108277161 other downstream 1864347 22127121 ~ 22315307 (+)
LOC103025565 scd5 other downstream 2193545 22456319 ~ 22465729 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other downstream 2224049 22486823 ~ 22491503 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other downstream 2230666 22493440 ~ 22502159 (+)

Expression


Co-expression Network