G178036


Basic Information

Item Value
gene id G178036
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20331217 ~ 20332128 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241193
gctagctagctaagcggttagcatctagctaatgctattgctgctccagcctcggagcggcacggctctgcacggagtgtgtgtttactgctccttacaacctgacgagtaaaatttagataatactgatctctgaacagtgaataagctagctaatgctatttgctgctccagcctcggagctgcacggctctggactctgtatagcactgaaactctgtataacgctgcacggagtgtgtgtttactgctccttacaacctgacgagtaaaatttagataatactgatctctgaacagtgaataagctagctagcttagcggttagcatctagctaatgctattgctgctccagcctcggagctgcacggctctggactctgtatagcactgaaactctctataacgctgcacggagtgtgtgtttactgctccttacaacctgacgagtaaaatccatacaaaaggcgcaccgtattataagacgcactgtcaatttttgtgaaaattaaaagtttttaagtgcgccttatagtccgaaaaatacggtaattaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241193 True 558 lncRNA 0.45 2 20331217 20332128

Neighbor

gene id symbol gene type direction distance location
LOC103029139 NA coding downstream 102923 20219002 ~ 20228294 (-)
LOC103029774 NA coding downstream 113023 20168776 ~ 20218194 (-)
LOC111195065 NA coding downstream 167317 20157825 ~ 20163900 (-)
LOC103030413 NA coding downstream 188647 20130604 ~ 20142570 (-)
LOC103028513 NA coding downstream 222056 20106939 ~ 20109161 (-)
katnal2 katnal2,LOC107573073,LOC102797751,LOC104955398 coding upstream 76233 20408361 ~ 20420818 (-)
sigmar1 sigmar1,LOC107573076,LOC107653128 coding upstream 89222 20421350 ~ 20424770 (-)
tmem267 tmem267,si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107750222,LOC107756535,LOC107554236 coding upstream 942392 21274520 ~ 21284697 (-)
rassf6 rassf6 coding upstream 965256 21297384 ~ 21312937 (-)
LOC103045065 lpar1,LOC107554848,LOC107723319 coding upstream 1057099 21389227 ~ 21423245 (-)
G178030 NA non-coding downstream 43875 20287030 ~ 20287342 (-)
G178014 smad2,LOC107743055,LOC107653131,LOC101470473,LOC101159109 non-coding downstream 73491 20235691 ~ 20257726 (-)
G177967 NA non-coding downstream 212056 20115674 ~ 20119161 (-)
G177910 NA non-coding downstream 335436 19990445 ~ 19995781 (-)
G177911 NA non-coding downstream 439441 19891534 ~ 19891776 (-)
G178069 NA non-coding upstream 64255 20396383 ~ 20399146 (-)
G178086 NA non-coding upstream 247576 20579704 ~ 20581712 (-)
G178090 NA non-coding upstream 283674 20615802 ~ 20616011 (-)
G178096 NA non-coding upstream 385625 20717753 ~ 20718065 (-)
G178134 NA non-coding upstream 509919 20842047 ~ 20842374 (-)
LOC111194984 sh2d4a other downstream 591904 19738649 ~ 19739313 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 1203094 19119786 ~ 19128123 (-)
G177704 NA other downstream 1239071 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 1396617 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 1712605 18614892 ~ 18618612 (-)
G178173 NA other upstream 959394 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 1601391 21933519 ~ 21933831 (-)
G178426 NA other upstream 2123369 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 2169190 22501318 ~ 22509783 (-)
G178450 NA other upstream 2340004 22672132 ~ 22672683 (-)

Expression


Co-expression Network