G178055 (sigmar1,LOC107573076,LOC107653128)


Basic Information

Item Value
gene id G178055
gene name sigmar1,LOC107573076,LOC107653128
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20421369 ~ 20424714 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241220
TTCTGGAGAAAGGCTGGACAGAAATGAACAAAAGGTGTTTTGACAGTATTTTCTGCAGAACATGAAGGTAAAGTTTTTAGACATACTGTATGAACAGTCTAAAGTGACAGTGAATTTCTGTAAGACATGAAACAATTATGTACAGTGACCAATAAACTGTTATTTCCCCCATCAGGATTGTCAAGTAATCTAGATATCACACAACCTCGTTTTTTTAGAAGGTTAAAAGCAAGTGCTTTACAAAAACCCGTCCCCTCTGCTGCCAGATCTGCCAATCTAAAGTAAAACCCGTCCTGTTACTTAACAAAATCAGGAACCACAGGGTAAAACTGGAGAGCACGgtggtcttcagaagaacccGGCTTCAGTCAGGTAGGTGTTGGTCTCCAGCAGCATGCCCTTTACGTAAACCCGGACTGTGTAGTATAGTGTTAGAAAGTCCTGCGTGCTGAAGACTGTGTCTGCTAGAGCAAAGCCCAGAGTGGACGGAATGAATCCTCGGCCGTACTCCACCATCCACGTCCCAGCAGTCCACTGCACTGAGGTAGCCTCTCCCACTGCGTGCACTATTGTGTCTCCTGGGTAGTACGTCTCGCTTTTAGTTGTTCCCTCTTTCCATTGTCTGAAATTTCCAGAAATTATGGTGTCTGAGATTTCTGCAAAATAACGCCCTGAGTGTCCGCTCGTGTCCACAGCGGTTCCGAACAGCAGCACGTATTCAGTCAGCGAGGCGTGAAGCAGGCACATGGAGCCCATCCAACCGCCCGCATTTACAAATATCCACTGCAGGTCCTCATCAGGCAGGATATGGCCCGGGTACCTCTTCCGCAGCTCCACCACCACTTTAGAGAAGGCCTGCTCGTGGTCCTGACCTGCGTACTGTTTGGCCAGTTTGGCGACATCCTCCTTGGTAAAGATGTACTGTTTATGAGCCAGCCAGTACTGCAAGTACTGCCCTGCTAAAACCAGCACTCCCACAAACACCACGAGTTTCAGGAATTTCGTAGTGAGAGACATGATAATAACCACGAAGATATCACCTAAAACGTGACATCAAACACGCTAGATCAAAGCAGGATCAAAGCTGGAACAGACAACACAACAAACTATCAACATCTAGCTAACCTATCTCACACAATCCCATT

Function

symbol description
sigmar1 Acts upstream of or within response to wounding. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in gut; head; muscle; and retina. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 16 and distal spinal muscular atrophy 2. Orthologous to human SIGMAR1 (sigma non-opioid intracellular receptor 1).

NR:

description
sigma non-opioid intracellular receptor 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241220 True 1145 lncRNA 0.47 4 20421369 20424714

Neighbor

gene id symbol gene type direction distance location
hdhd2 hdhd2,LOC107738843,LOC107743237 coding upstream 13801 20403494 ~ 20407568 (+)
skor2 skor2,LOC107743073,LOC107653123,LOC107738854,LOC107558682 coding upstream 26213 20381689 ~ 20395156 (+)
smad2 smad2,LOC107743055,LOC107653131 coding upstream 163624 20229527 ~ 20257745 (+)
LOC103027562 NA coding upstream 266054 20152461 ~ 20155315 (+)
LOC103030097 NA coding upstream 271251 20149258 ~ 20150118 (+)
galt galt,LOC107653127,LOC107667272 coding downstream 4048 20428762 ~ 20578785 (+)
LOC103022731 cntfr,LOC107554853,LOC107756542,LOC107738850,LOC107554231 coding downstream 417323 20842037 ~ 21177458 (+)
LOC103023250 NA coding downstream 778548 21203262 ~ 21258587 (+)
cst8 NA coding downstream 860532 21285246 ~ 21295849 (+)
musk musk coding downstream 901498 21326212 ~ 21369274 (+)
G178035 NA non-coding upstream 89366 20331234 ~ 20332003 (+)
G178029 NA non-coding upstream 133790 20287072 ~ 20287579 (+)
G178026 NA non-coding upstream 158595 20261886 ~ 20262774 (+)
G177984 NA non-coding upstream 180450 20236217 ~ 20240919 (+)
G177995 NA non-coding upstream 217818 20199764 ~ 20203551 (+)
G178088 NA non-coding downstream 177737 20602451 ~ 20602789 (+)
G178091 NA non-coding downstream 200065 20624779 ~ 20625028 (+)
G178097 NA non-coding downstream 296359 20721073 ~ 20721391 (+)
G178108 NA non-coding downstream 507067 20931781 ~ 20958483 (+)
G178105 NA non-coding downstream 812425 21237139 ~ 21264984 (+)
ier3ip1 ier3ip1,LOC106633120 other upstream 22204 20396377 ~ 20399165 (+)
G177950 NA other upstream 281805 20138822 ~ 20139564 (+)
LOC103043854 NA other upstream 324658 20089238 ~ 20096711 (+)
LOC103042206 LOC108428882 other upstream 645578 19750942 ~ 19775791 (+)
LOC111194983 NA other upstream 698809 19720301 ~ 19722560 (+)
LOC103046694 LOC108440723,LOC108277161 other downstream 1702407 22127121 ~ 22315307 (+)
LOC103025565 scd5 other downstream 2031605 22456319 ~ 22465729 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other downstream 2062109 22486823 ~ 22491503 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other downstream 2068726 22493440 ~ 22502159 (+)
G178352 NA other downstream 2119926 22544640 ~ 22546130 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G77349 sigmar1,LOC107573076 non-coding CM030129.1 CM030129.1 10330720 ~ 10332498 (+)