G178069


Basic Information

Item Value
gene id G178069
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20396383 ~ 20399146 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241241
CtttattaaaatcaaataaGACAAGCATTGACTGGCTCACAGTAGCCTAGGTAACAAAAGCATGTTAAAGCTTATTGTGTAACCAAAACTGACAATTCACAACGCCCTTACAGTCTCCTTTTACAAACAATTTCCCTTTGGTTAAAGTACACACAACACAGTGGTCTGCATTAACCATTCACTGTATCTATCTAGTACATGCATGGAGTGTGAACTCAAACACTGAAAAGCGGACACATCTTAAATAAGTTTCACgttatttatgcattttaagAAGCACAACTGCCTCTATGTAAAAGGCCACTGCTTTGCTTTAAAGTAGAAAGTGTCATGCTGAACTAAATTGGTTGAACGTTTTAGATGCATAACGTCACGGAGATCCAGATTGCACATGAAGAGGGAACTGTGTACAAAAACTAAATGACATAGTATATGGGGCTCTTTTTAAACAAGAATTATACTGAGCAACATTATACAAACAAATGAATAGAATTTATACGTTATATATGAAGATATAAAACATGGCGGTAGTAAACAATCACATGATGAATCCCAGAAACGTTGTGCCTGTTCTTGAGATGCAACATTGAGACACCTGACGCAACAACAGCATAAACCGCATGTATAAAAAATGTCCTTTTCTTTTGTCTGTCCTTGATCTTTTGTTCCAAGATGAACGTCAGACTTTCTTCATCcaaacagcaacagcaacaCTATGCAGACGGTATTTACTATTATCAAAGGCACTCTCATGACTGTCCTGACAGATCGGATTAGGTTTAAAAGTTGTGCTTTAATTCCTGGTTCATCTCCAAACCCACCAATGTTCTGATCTGCTCCCCAGCCAATTTACTGAGGAATCGCTCCTCGTGCAGCACAGCGATCGCATTCGTGCACAGAATCGCTGTTTGAATCAGGGAGTACAGAGTAAACGCCATGTTGGCACTCCTCGCCTTCTGCTGTGAGATGACGAC

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process

KEGG:

id description
ko00240 Pyrimidine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU241241 True 974 lncRNA 0.39 3 20396383 20399146

Neighbor

gene id symbol gene type direction distance location
LOC103029139 NA coding downstream 168089 20219002 ~ 20228294 (-)
LOC103029774 NA coding downstream 178189 20168776 ~ 20218194 (-)
LOC111195065 NA coding downstream 232483 20157825 ~ 20163900 (-)
LOC103030413 NA coding downstream 253813 20130604 ~ 20142570 (-)
LOC103028513 NA coding downstream 287222 20106939 ~ 20109161 (-)
katnal2 katnal2,LOC107573073,LOC102797751,LOC104955398 coding upstream 9215 20408361 ~ 20420818 (-)
sigmar1 sigmar1,LOC107573076,LOC107653128 coding upstream 22204 20421350 ~ 20424770 (-)
tmem267 tmem267,si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107750222,LOC107756535,LOC107554236 coding upstream 875374 21274520 ~ 21284697 (-)
rassf6 rassf6 coding upstream 898238 21297384 ~ 21312937 (-)
LOC103045065 lpar1,LOC107554848,LOC107723319 coding upstream 990081 21389227 ~ 21423245 (-)
G178036 NA non-coding downstream 64255 20331217 ~ 20332128 (-)
G178030 NA non-coding downstream 109041 20287030 ~ 20287342 (-)
G178014 smad2,LOC107743055,LOC107653131,LOC101470473,LOC101159109 non-coding downstream 138657 20235691 ~ 20257726 (-)
G177967 NA non-coding downstream 277222 20115674 ~ 20119161 (-)
G177910 NA non-coding downstream 400602 19990445 ~ 19995781 (-)
G178086 NA non-coding upstream 180558 20579704 ~ 20581712 (-)
G178090 NA non-coding upstream 216656 20615802 ~ 20616011 (-)
G178096 NA non-coding upstream 318607 20717753 ~ 20718065 (-)
G178134 NA non-coding upstream 442901 20842047 ~ 20842374 (-)
G178157 NA non-coding upstream 857503 21256649 ~ 21265014 (-)
LOC111194984 sh2d4a other downstream 657070 19738649 ~ 19739313 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 1268260 19119786 ~ 19128123 (-)
G177704 NA other downstream 1304237 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 1461783 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 1777771 18614892 ~ 18618612 (-)
G178173 NA other upstream 892376 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 1534373 21933519 ~ 21933831 (-)
G178426 NA other upstream 2056351 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 2102172 22501318 ~ 22509783 (-)
G178450 NA other upstream 2272986 22672132 ~ 22672683 (-)

Expression


Co-expression Network