G178086


Basic Information

Item Value
gene id G178086
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20579704 ~ 20581712 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241259
TCCGAACGCAGCCGATTAGccattaataaatatttgagaAGGTTGCTCATCATTTAGGTAAGAGTCCGAGAAATGCcagtttagattagattagtttaATTTACCTTTATTCCCCACGTTAGCGGCAATTTGTCTAAACATTGTCATTCCTGATTTTGGAACACGCCCAAGTAgaaaaaatcaagtaaaaaaagtataaaagataCAGTTTATcccataaaacaaaaataaactaataggGAACTACTGTATAATGATATGacaaaagtaattggacagcAGTATGTGAACTAATCACAAGGTGTTACATCAGGTGGTGAGTTGGGAAAGCCACACTTTTGTAGGTAAAAGTTGGGAGGTAAAAATCTTGTGAGCAAAGTTAAATTTACACTGCTTGTACAGTGTGCTCAAGCCAAGGCAACACAAATTCATCAAGAATTTGATCATTAGAGCATGGAGTTCACACTTTATTCCCCACTTTAGTGGAAATTTGTCAGAACATTGTCATTCCTGATTTTGGAACACTGCCAAGTAAATCaatagtagaaaaaaaacagtttatccaATCATACAAAGAGAAACTAATAGGGAACTATaatgatatgccaaaagtcattggaCCGCAGTATGGGAACTGATCACAAAGAGGTGAACTGATCACCTCAGGTGGTGAGttaggaatgcccacacctgtaggTATAAGTGGTGAGTTACTATCTTGTGACCGAGGTTAAATACACTGCTTGTACAGTGCCAAGTAGAAAAAGAGTGAATCAACAaagttttacagtataaaagatACAATTTATCCCATTATTCAAAGAGAAACTAATAGGGAACTATAaagatatgccaaaagtcattggaCGGCACTATGTGAACTGGGGATGGAGTGTTACCTCAGGTGGTAAGTTGGAAAGCCACACTTTTGTAGGTTTTGTaggtaagttgtgaggtgctatcttgtgaatAAAGTTCAATTCTGATCGTAGAGATGGCTCAAGTTGCAAGGTTATCTGAATAATTGAGCATTGA

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU241259 True 1035 lncRNA 0.37 2 20579704 20581712

Neighbor

gene id symbol gene type direction distance location
sigmar1 sigmar1,LOC107573076,LOC107653128 coding downstream 154934 20421350 ~ 20424770 (-)
katnal2 katnal2,LOC107573073,LOC102797751,LOC104955398 coding downstream 158886 20408361 ~ 20420818 (-)
LOC103029139 NA coding downstream 351410 20219002 ~ 20228294 (-)
LOC103029774 NA coding downstream 361510 20168776 ~ 20218194 (-)
LOC111195065 NA coding downstream 415804 20157825 ~ 20163900 (-)
tmem267 tmem267,si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107750222,LOC107756535,LOC107554236 coding upstream 692808 21274520 ~ 21284697 (-)
rassf6 rassf6 coding upstream 715672 21297384 ~ 21312937 (-)
LOC103045065 lpar1,LOC107554848,LOC107723319 coding upstream 807515 21389227 ~ 21423245 (-)
epha5 epha5,LOC108428864,LOC107702602 coding upstream 963505 21545217 ~ 21665726 (-)
LOC111194991 NA coding upstream 1340618 21922330 ~ 21923015 (-)
G178069 NA non-coding downstream 180558 20396383 ~ 20399146 (-)
G178036 NA non-coding downstream 247576 20331217 ~ 20332128 (-)
G178030 NA non-coding downstream 292362 20287030 ~ 20287342 (-)
G178014 smad2,LOC107743055,LOC107653131,LOC101470473,LOC101159109 non-coding downstream 321978 20235691 ~ 20257726 (-)
G177967 NA non-coding downstream 460543 20115674 ~ 20119161 (-)
G178090 NA non-coding upstream 34090 20615802 ~ 20616011 (-)
G178096 NA non-coding upstream 136041 20717753 ~ 20718065 (-)
G178134 NA non-coding upstream 260335 20842047 ~ 20842374 (-)
G178157 NA non-coding upstream 674937 21256649 ~ 21265014 (-)
G178156 NA non-coding upstream 686584 21268296 ~ 21321572 (-)
LOC111194984 sh2d4a other downstream 840391 19738649 ~ 19739313 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 1451581 19119786 ~ 19128123 (-)
G177704 NA other downstream 1487558 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 1645104 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 1961092 18614892 ~ 18618612 (-)
G178173 NA other upstream 709810 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 1351807 21933519 ~ 21933831 (-)
G178426 NA other upstream 1873785 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 1919606 22501318 ~ 22509783 (-)
G178450 NA other upstream 2090420 22672132 ~ 22672683 (-)

Expression


Co-expression Network