G178105


Basic Information

Item Value
gene id G178105
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 21237139 ~ 21264984 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241284
tttatgtttttaatctaaaatatctgaaaaggcttctcatttctgaagtgtttatccaccTTACCTTGGTTATTTGCGCCTCCTTACGTTCCTCTCAGTTCGAGCACTGAGCTCGTACTAAAAAAAGTTCCAGCACTGTTCTAgcaccctaaccctaaccctcgatccacagtgtcaatCATGTGAACCAGTAACACGTTGTACAAGGCATTACCACCAACAGCAGACAGCATCCAAGCGCAAGTCTGTcaaaaatcacaataaattcaATGCAGAGCTCCACATGCTTGtttcagtgttctttagcttccatgggacttTATACAATACTTAATCCCATaagtcccatgatttttggcatacCTGTGTTGTTCCATAAAGAAGTATTTCTTTTAGAAGgcacttctctctctttattacaAACACGGTTCTTGAAGGATTCAAAACGATTCTTCTATggcatttttaagagtgtaatgAGTTATGGAACCTTCTCTAATTGATCAGTACTGCTCTGTTATGGTGCTGAGAAGGTTTCTGACTCTACTTTTGGTAGATGTTGTATTTTTCAGTACTGTACAAATCTGTCCAATCTGCCTGTTGTACGTTCATAACTCTCCTGACAAGAAGGTTGACTTAGACACTGTGTGTATCTGCTGGTATGCATATTGAAGAAATTACATTGATGCGCATCTGTGGAGATGggttgtatatacagctctggaaaaaaaattaagagaccacttcagtttctgaatcagtttctctgattttgctacttataggtttatgtttgagtaaaatgaacattgttgtttttttctataaactacaaacaacatttctcccaaattacaaataaacatatggttatttagagcatttatttgcagaacattaggaaaaagatgcagagctttcagacctcaaataaagcaaagaaaacaagttcatattcataaagatttcagagttcagaaatcaatatttgcggaataaacctggttttaaatctcagttgccatgcatcttggcatgttctcctccaccagtcttacacactgcttttggataactttatgcctttactcctggtgaaataatttaagcagttcagtttgatttgatggcttgtgatcatccatcttcctcttgattatataacagaggttttcaacttggtaaaatcaaagaaacacatcatttacaagtggtctaatttttttccccagcgctgtatacagtatgtgaCACTCTTTTAACAATAGAGGTGCTACAAAGGGTTCTTTTCACTTCCAATTAAGTGTGGAGAAGTCCATCACTCTTATGACCCCTTTAGTGGTCACAGACCTCCAGGTTAAGAAGTTAAATGTAGTTTAAAGTGCTAAAGAACCTTAAAATAGTGATATTTAACGtcttattctcttttttaaaaacacggTTACTTGTGGAGTGAAGGCTATGATCACACTACAAGgctaaactgattcagattatTTTTGCCCTAATGTGATCAATGAGAAActgattcctttttttttttttacatcattggCATTCAGCACAACATCAAAATTGTATGGCACACCCAGAAAAGGTGACATGCGTACTGTTTCAGGAAGCAAatctgttcacattacacacatacagatcagttactgtacatttatgAATGTAAACCGTCGGAGGTAGACAAAATTGACTGAATTGATTTATTAGGCTTGTAATGTAGACAATAAAACAGTTTACTTTTGATTTATTATAGCAGATTAAGgaaacaacaattaaaaaaatctggattttaCTTCAGTGATTCGATTACTTTAGTGCATGTAAACACTTACTCTGATTTCTTTCAGTTTGCTCAGTCTACAGTATAGAATATATCATTTATTGTACATTTATGAATGTATGAATGTAAATCATCCAGGTAGACAAATTTGAtcttggccaaaaaaaaaaagaaaaaaagaagattgaaattattatataatataagttaATATAATTGGTCTTCAAAGAAAGGCAGAGAAACCTTTGTAGCACTGTCAATTTAAAGATCCTGTACTGTCCTGTATTGAAACACCACATTAAAGACTgaatttatgctttttttttgtcaaatacaaaaaaaaaaaaacgaatgcaATACTTTACTGATCTGTTTTCCCATTGTCTGTACTGTCTCTtgcatgtttatataaaaaaacacaaaaacaaaccagtaaaaaaaaaaaagagagagaaaaatcagATACACTTGCTTCacatgtgtgttgtgttgttggtGAACGTTGGGCTACTGTTGTCTGTGTAACGGGGTGTTTTGAGGCGAATGCAAAGAAGTCCATGAtaaatgtatgtacagtatattttttgcTTCTGTGTACAACATAAGCTGTTTTATTACTCCTCTGTTCATAT

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU241284 True 2424 lncRNA 0.34 2 21237139 21264984

Neighbor

gene id symbol gene type direction distance location
LOC103022731 cntfr,LOC107554853,LOC107756542,LOC107738850,LOC107554231 coding upstream 59681 20842037 ~ 21177458 (+)
galt galt,LOC107653127,LOC107667272 coding upstream 658354 20428762 ~ 20578785 (+)
hdhd2 hdhd2,LOC107738843,LOC107743237 coding upstream 829571 20403494 ~ 20407568 (+)
skor2 skor2,LOC107743073,LOC107653123,LOC107738854,LOC107558682 coding upstream 841983 20381689 ~ 20395156 (+)
smad2 smad2,LOC107743055,LOC107653131 coding upstream 979394 20229527 ~ 20257745 (+)
cst8 NA coding downstream 20262 21285246 ~ 21295849 (+)
musk musk coding downstream 61228 21326212 ~ 21369274 (+)
grin3a grin3a,LOC107750958,LOC107710005,LOC107702562,LOC107554227,LOC104941214 coding downstream 667347 21932331 ~ 21964708 (+)
LOC103047607 LOC103047607 coding downstream 1057736 22322720 ~ 22334543 (+)
sec31a sec31a coding downstream 1156378 22421362 ~ 22453611 (+)
G178108 NA non-coding upstream 278656 20931781 ~ 20958483 (+)
G178097 NA non-coding upstream 515748 20721073 ~ 20721391 (+)
G178091 NA non-coding upstream 612111 20624779 ~ 20625028 (+)
G178088 NA non-coding upstream 634350 20602451 ~ 20602789 (+)
G178055 sigmar1,LOC107573076,LOC107653128 non-coding upstream 812425 20421369 ~ 20424714 (+)
G178202 NA non-coding downstream 275593 21540577 ~ 21546968 (+)
G178233 NA non-coding downstream 434449 21699433 ~ 21699633 (+)
G178254 NA non-coding downstream 707730 21972714 ~ 21973034 (+)
G178278 NA non-coding downstream 834335 22099319 ~ 22099558 (+)
G178280 NA non-coding downstream 835056 22100040 ~ 22101283 (+)
ier3ip1 ier3ip1,LOC106633120 other upstream 837974 20396377 ~ 20399165 (+)
G177950 NA other upstream 1097575 20138822 ~ 20139564 (+)
LOC103043854 NA other upstream 1140428 20089238 ~ 20096711 (+)
LOC103042206 LOC108428882 other upstream 1461348 19750942 ~ 19775791 (+)
LOC111194983 NA other upstream 1514579 19720301 ~ 19722560 (+)
LOC103046694 LOC108440723,LOC108277161 other downstream 862137 22127121 ~ 22315307 (+)
LOC103025565 scd5 other downstream 1191335 22456319 ~ 22465729 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other downstream 1221839 22486823 ~ 22491503 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other downstream 1228456 22493440 ~ 22502159 (+)
G178352 NA other downstream 1279656 22544640 ~ 22546130 (+)

Expression


Co-expression Network