G178108


Basic Information

Item Value
gene id G178108
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20931781 ~ 20958483 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241287
TATGTTACGCAGCCTggctctccttccacactaccggactctaTTTCCCAGAATCCCCCAGATTATGACATCAATAATAACCCTTCACATTCACCCAATCAtgttacgctccgacgctctgattcacctgttTACTAAATTACTTCCGGTTCATTCTTATCTAAGATTCTGTATTTAAGGCATCCGCTTGTAAGGAAACACTGCGAGGTATTGTCAACTCATGTTGCGTACTAAGCGTTTTCTGGATTactgtttttgccttctcgttacgactCTGTGTTTGGATTttcggtttatgtcttttgttttgcccttgtTGGATTTGGTATATGGTTGGACTGTTTCCCGGTTTAGAACTTGGACTGTATCTTTGACAACGTCTCTGGTTATCGGTGAGATTATTGTTTGTCTTCTGTTAGCAGAACCTGTTAACCTTTCTTATAATAAACCTGCctgtatttttaactcggctcgcgtcactcctctcTACCTGGCGTTTCAtaaacaaacaagtgttaaacaaaccaggtttggtttgagagcatcagttgtaaagttgtgaagaggtagagttacaagtatacagtgaatatcccttttttgagtaatgttctaatccatattatggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241287 True 629 lncRNA 0.40 2 20931781 20958483

Neighbor

gene id symbol gene type direction distance location
galt galt,LOC107653127,LOC107667272 coding upstream 352996 20428762 ~ 20578785 (+)
hdhd2 hdhd2,LOC107738843,LOC107743237 coding upstream 524213 20403494 ~ 20407568 (+)
skor2 skor2,LOC107743073,LOC107653123,LOC107738854,LOC107558682 coding upstream 536625 20381689 ~ 20395156 (+)
smad2 smad2,LOC107743055,LOC107653131 coding upstream 674036 20229527 ~ 20257745 (+)
LOC103027562 NA coding upstream 776466 20152461 ~ 20155315 (+)
LOC103023250 NA coding downstream 244779 21203262 ~ 21258587 (+)
cst8 NA coding downstream 326763 21285246 ~ 21295849 (+)
musk musk coding downstream 367729 21326212 ~ 21369274 (+)
grin3a grin3a,LOC107750958,LOC107710005,LOC107702562,LOC107554227,LOC104941214 coding downstream 973848 21932331 ~ 21964708 (+)
LOC103047607 LOC103047607 coding downstream 1364237 22322720 ~ 22334543 (+)
G178097 NA non-coding upstream 210390 20721073 ~ 20721391 (+)
G178091 NA non-coding upstream 306753 20624779 ~ 20625028 (+)
G178088 NA non-coding upstream 328992 20602451 ~ 20602789 (+)
G178055 sigmar1,LOC107573076,LOC107653128 non-coding upstream 507067 20421369 ~ 20424714 (+)
G178035 NA non-coding upstream 599778 20331234 ~ 20332003 (+)
G178105 NA non-coding downstream 278656 21237139 ~ 21264984 (+)
G178202 NA non-coding downstream 582094 21540577 ~ 21546968 (+)
G178233 NA non-coding downstream 740950 21699433 ~ 21699633 (+)
G178254 NA non-coding downstream 1014231 21972714 ~ 21973034 (+)
G178278 NA non-coding downstream 1140836 22099319 ~ 22099558 (+)
ier3ip1 ier3ip1,LOC106633120 other upstream 532616 20396377 ~ 20399165 (+)
G177950 NA other upstream 792217 20138822 ~ 20139564 (+)
LOC103043854 NA other upstream 835070 20089238 ~ 20096711 (+)
LOC103042206 LOC108428882 other upstream 1155990 19750942 ~ 19775791 (+)
LOC111194983 NA other upstream 1209221 19720301 ~ 19722560 (+)
LOC103046694 LOC108440723,LOC108277161 other downstream 1168638 22127121 ~ 22315307 (+)
LOC103025565 scd5 other downstream 1497836 22456319 ~ 22465729 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other downstream 1528340 22486823 ~ 22491503 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other downstream 1534957 22493440 ~ 22502159 (+)
G178352 NA other downstream 1586157 22544640 ~ 22546130 (+)

Expression


Co-expression Network