G178156


Basic Information

Item Value
gene id G178156
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 21268296 ~ 21321572 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241364
aaaaaaatcaatttttattttactatataatttgaacagaaaatctgtcctttacactgagccaaaatttcttgatgaatggaccaatagaaatacttcaaaattacctaaaaaaaaattgacttctgttgaaagtttagaaggttttttctctctcctgtaaagttgctgtattttattggacagcgatgttttattaagtattatttgCTGAGTTATTGTTAATTGAGTTATTATTACAAAATTCTCACATTTTTTCCTGTAACATTATGGCGAATCATATATTTCAGAAAACGGAACACAAACTCTTATCAGCCAAAATTAAAACCGCCAGCATAATATTAAGCAGGTCCAAAAGCAGGTTCCCTTTGTGCCTCCAAAATGACTCAACCGACTCAATGACCCACTGTAGAACAGCGAGGGTGTCCTGTGATATCTGGCACCGATAGATCATATAGTGACATCCCACATCTCCTTTATTTTGTGTAAACtagaagaataataataagaagaaggcCTCCATAATCAGTTCCAGAGCTCTTTAAGCTCTTTATGTTCTTCACTGATGACCTAATTTACTGTCATTGACTCTACTTTGATCCCCATATATGAAAAACAGCAGCTCCAGATGCAGAACAAACACAGCCGACAAAGACCAGATCTCCTACACTCTTAACAGCAAGTCaccttaaatgtatttgttttctacattgtagattaatactcaAGTCATCCAAGGTATGAAGAGAAACATATATGTAATTATTCTGCAAACAGAGGAAACTTGTGTCTTAGTACAACAAATGTTGGCTCACTAGCTCTTGAGATTatgtgtcaaaatgttttgttttcataattttaatctgaaaataTCAGCTTTTAATGCATTGTGAGTTCGGTGTGCTACTAACTGCACTATATAATTATTctgcaaacaaaaaacaaaaaaaggtgttatattttagattcttcaaagtagcacccttttgcttagatagagatagagttttgcacatcttggctagaTTTTCtcgtcagctttatgaggtagagtcacctggaattcaggctttcagttaacagctgtgctaaacttgtcaaGTGTTATGTACTTAAATTACTTGCCTCTTAATAAGTTGTTTTGATTAATGGTCTgtaatgtttgtttaaattatgtgttAAGAGAAGATAAAATGACAATGTAAACAagtagaacatttatttaaaactatataataattttaggtTCCTTACTGTATAAGCTCTTTACAACTtttgatattaaattttttatgtaaatttagCATTGACAGAACGGGTTGAATCAAGCTCTTCTCCTGCTCAATGTTAGCAGACTCCATTCAGATAAATGGAGctgactaactaactagcttgcTGTATGGTGGCCTAGACGGCCTTCTTCTACGATGGCCAAGTAGATGTGAAATGCGGTATGCAGTACTGTTGGGAGTAGgagcagaaaaaataaaacttaaatgcatttttaaatcagtttcagTTATTTTGAATAGATTCAGATTCGCCAGGACTAGGAATcaccattttttaaagaatcgtgtttttttttttttttctcagcaccTCTAGAACCACTTAACTAAGTGAAGTAGAAAGAccaaaaactttaagaaatgaaggtcagtcactgtaaaaaaaaaaaacttaaaagtatTCACAATTGCAGTCAAAGACCTCAAAAACgagtgatgaaactggcactcatcagaaccaccccaggaaaaggaagagcgagagttacCTATGTTACACATGATCTTCAgagagttagagttagagttatcagcctcagaaaccacaagtttcacagagtattctggtttgtttaacacttttaagttactacatgattcattatgtgttccttcatagtctggatgacctcagtattaatttacaatgtagggaaatGTATATGTTGGGTAGTAACTCTCCCTACTCTCCAGGGTAgattttgattgcattcagtgacgaGATGCAAAATATAGAGAGGTTAGGATGCACCAAAAAAGTGCATAACTCTTTACACCATCAGTACATCATGCCGAAATAACAGTGGTCTAAACAGTGGTCTATAATCTGtcagtttcctttttttttttttttttgctttgttgatTGTAGATCTGGTTTGCTCAGCATTTCAAATTTCTTTGTTTCctcactagggctgcacgatatatcgtttaagcatcgtttaagtcatcgcgaagaagtagatacacagcactgtctctgtgtctgtgtgagtgacaggcagCTGTTGCCTGAGAAGCGCAAAGTGGGGGAGAGGGTTAGGAGGAAATACGAGATAACCGCTTGGCCTCCATCCACGTGTTTGGGCATGTGTTTGAAatctgtgcacctcagtccagcacagtttttcagcgcagatattttcagttacatctgaattcacacttttaattccAGAAAACACGCTCTCATTTACCTATTTAAAAAGCCacttaaatgcctgattaaagggtcgattactgttttttttcttgggttttgagagctcggcgCTGACGTTATGGGCCCTGCTTTATTTAATAGCGCGATATATATAATCGgaaaaaaataacctttttcCCCCCCAATATCGTGCAGACCTAGTCCTCACACTATTCAAACTCAAAAAATCGCAAGTCTCATCTCATCACATCACATTCTCCATCACATATCAGCTTTGCTCCTGTTTCAgcttcactgtaaataaaagaaatctacATTACAATCCTTTACATTTCAACCCGTCAACTTGAAACCGACGAATAACTTTTTAATACAGACTGAACTCTTCGATTTTAATAAACAGCCTACAGCacttttaagtttgttttaaaCCTGTGTTTAAGTTTATAAGTTTGTAAGTTTACTGTTCCTCTGCTTCCTCTGCGGTGAAGGAATGAAAAATGACAAATGATGATGAATAAATTTGCTGGAACCATTCTGATTTTGCTTTATACTGACATGCcataagtcatgggacagcagcagcaacagcagtttGTAACTTGTAACTGTGATGTGTTGCTTtaggggacagcttgggaatgcccacacctgttgTGAGCTGTTGTGGGGTCTTATCTTGTGAGAGAGGAGGTGGAACATTGGCCAGTGGGCCGGAAATGGATGGTAaaatgatggtgaccggcagtgtctggctagaattgtccatgcataCAGAAAAGTCAttcagaaatgaaagaaatcacacattcacatttaattttaatttaatgcagtgtgttttttttttttttaagcttatatgggacatggcaaaagtcatgggacacaatgcaGTACACAGTAGTTTCTGTCCTCTGATTTGTGGCATACCAGTGTAGatattgcatttatttctgTAGAACTTTTAGAATTAGGGAAAGAATGatactgtgttttctttttaaataataagtgaACTGTAAACTAAAGGGAGAAAATAagact

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241364 True 3504 lncRNA 0.36 5 21268296 21321572

Neighbor

gene id symbol gene type direction distance location
sigmar1 sigmar1,LOC107573076,LOC107653128 coding downstream 843526 20421350 ~ 20424770 (-)
katnal2 katnal2,LOC107573073,LOC102797751,LOC104955398 coding downstream 847478 20408361 ~ 20420818 (-)
LOC103029139 NA coding downstream 1040002 20219002 ~ 20228294 (-)
LOC103029774 NA coding downstream 1050102 20168776 ~ 20218194 (-)
LOC111195065 NA coding downstream 1104396 20157825 ~ 20163900 (-)
LOC103045065 lpar1,LOC107554848,LOC107723319 coding upstream 67655 21389227 ~ 21423245 (-)
epha5 epha5,LOC108428864,LOC107702602 coding upstream 223645 21545217 ~ 21665726 (-)
LOC111194991 NA coding upstream 600758 21922330 ~ 21923015 (-)
plppr1 plppr1,LOC107653496,LOC107750956,LOC107702599,LOC107710008,LOC106568589 coding upstream 652935 21974507 ~ 22038937 (-)
snx30 snx30,LOC107569385 coding upstream 1021884 22343456 ~ 22376932 (-)
G178157 NA non-coding downstream 3282 21256649 ~ 21265014 (-)
G178134 NA non-coding downstream 425922 20842047 ~ 20842374 (-)
G178096 NA non-coding downstream 550231 20717753 ~ 20718065 (-)
G178090 NA non-coding downstream 652285 20615802 ~ 20616011 (-)
G178086 NA non-coding downstream 686584 20579704 ~ 20581712 (-)
G178195 NA non-coding upstream 153658 21475230 ~ 21475642 (-)
G178201 NA non-coding upstream 194016 21515588 ~ 21515985 (-)
G178236 NA non-coding upstream 494555 21816127 ~ 21816402 (-)
G178237 NA non-coding upstream 511169 21832741 ~ 21832989 (-)
G178251 NA non-coding upstream 603920 21925492 ~ 21927360 (-)
LOC111194984 sh2d4a other downstream 1528983 19738649 ~ 19739313 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 2140173 19119786 ~ 19128123 (-)
G177704 NA other downstream 2176150 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 2333696 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 2649684 18614892 ~ 18618612 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 611947 21933519 ~ 21933831 (-)
G178426 NA other upstream 1133925 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 1179746 22501318 ~ 22509783 (-)
G178450 NA other upstream 1350560 22672132 ~ 22672683 (-)
LOC111195067 NA other upstream 1613918 22935490 ~ 22941664 (-)

Expression


Co-expression Network