G178278


Basic Information

Item Value
gene id G178278
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22099319 ~ 22099558 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241500
ctacactgtaaaacatttcaagttggttaaactcagcaacataagttcccctgctgccttaaaaagctgagttaactcaacttgatAAAAACATTTGTATCAACTCAAGATGTTAAGTTAAACAAGTTGTTCAAATACTCATTACTTATTGTTTCAACTTGATGCACTGAGTTAAAACAActcaagtgtttaatttgtcctttttaaaaattgatctgtttagtcaaataaactaacaat

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0006040 amino sugar metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:1901136 carbohydrate derivative catabolic process biological_process
GO:0006022 aminoglycan metabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241500 True 240 lncRNA 0.30 1 22099319 22099558

Neighbor

gene id symbol gene type direction distance location
grin3a grin3a,LOC107750958,LOC107710005,LOC107702562,LOC107554227,LOC104941214 coding upstream 134611 21932331 ~ 21964708 (+)
musk musk coding upstream 730045 21326212 ~ 21369274 (+)
cst8 NA coding upstream 803470 21285246 ~ 21295849 (+)
LOC103023250 NA coding upstream 840732 21203262 ~ 21258587 (+)
LOC103022731 cntfr,LOC107554853,LOC107756542,LOC107738850,LOC107554231 coding upstream 921861 20842037 ~ 21177458 (+)
LOC103047607 LOC103047607 coding downstream 223162 22322720 ~ 22334543 (+)
sec31a sec31a coding downstream 321804 22421362 ~ 22453611 (+)
tmem150c tmem150c,LOC107558260 coding downstream 368879 22468437 ~ 22476305 (+)
LOC103022635 mat2al,LOC108440739,LOC108276530,LOC107732036,LOC107653488,LOC107573852,LOC102202437 coding downstream 410330 22509888 ~ 22515585 (+)
LOC111195066 NA coding downstream 419861 22519419 ~ 22528083 (+)
G178254 NA non-coding upstream 126285 21972714 ~ 21973034 (+)
G178233 NA non-coding upstream 399686 21699433 ~ 21699633 (+)
G178202 NA non-coding upstream 552351 21540577 ~ 21546968 (+)
G178105 NA non-coding upstream 834335 21237139 ~ 21264984 (+)
G178108 NA non-coding upstream 1140836 20931781 ~ 20958483 (+)
G178280 NA non-coding downstream 482 22100040 ~ 22101283 (+)
G178282 NA non-coding downstream 3191 22102749 ~ 22103046 (+)
G178289 NA non-coding downstream 213612 22313170 ~ 22314294 (+)
G178310 NA non-coding downstream 240421 22339979 ~ 22386661 (+)
LOC111195069 NA non-coding downstream 281052 22380610 ~ 22381578 (+)
ier3ip1 ier3ip1,LOC106633120 other upstream 1700154 20396377 ~ 20399165 (+)
G177950 NA other upstream 1959755 20138822 ~ 20139564 (+)
LOC103043854 NA other upstream 2002608 20089238 ~ 20096711 (+)
LOC103042206 LOC108428882 other upstream 2323528 19750942 ~ 19775791 (+)
LOC111194983 NA other upstream 2376759 19720301 ~ 19722560 (+)
LOC103046694 LOC108440723,LOC108277161 other downstream 27563 22127121 ~ 22315307 (+)
LOC103025565 scd5 other downstream 356761 22456319 ~ 22465729 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other downstream 387265 22486823 ~ 22491503 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other downstream 393882 22493440 ~ 22502159 (+)
G178352 NA other downstream 445082 22544640 ~ 22546130 (+)

Expression


Co-expression Network