G178279


Basic Information

Item Value
gene id G178279
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22099319 ~ 22099518 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241501
ggacaaattaaacacttgagTTGTTTTAACTCAGTGCATCAAGTTGAAACAATAAGTAATGAGTATTTGAACAACTTGTTTAACTTAACATCTTGAGTTGATACAAATGTTTTTatcaagttgagttaactcagctttttaaggcagcaggggaacttatgttgctgagtttaaccaacttgaaatgttttacagtgtag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241501 True 200 lncRNA 0.32 1 22099319 22099518

Neighbor

gene id symbol gene type direction distance location
plppr1 plppr1,LOC107653496,LOC107750956,LOC107702599,LOC107710008,LOC106568589 coding downstream 60382 21974507 ~ 22038937 (-)
LOC111194991 NA coding downstream 176304 21922330 ~ 21923015 (-)
epha5 epha5,LOC108428864,LOC107702602 coding downstream 433593 21545217 ~ 21665726 (-)
LOC103045065 lpar1,LOC107554848,LOC107723319 coding downstream 676074 21389227 ~ 21423245 (-)
rassf6 rassf6 coding downstream 786382 21297384 ~ 21312937 (-)
snx30 snx30,LOC107569385 coding upstream 243938 22343456 ~ 22376932 (-)
enoph1 enoph1,LOC107702573,LOC107715850,LOC102782295 coding upstream 379195 22478713 ~ 22484769 (-)
trnam-cau_23 NA coding upstream 431090 22530608 ~ 22530679 (-)
trnam-cau_24 NA coding upstream 431306 22530824 ~ 22530895 (-)
trnam-cau_25 NA coding upstream 431522 22531040 ~ 22531111 (-)
G178251 NA non-coding downstream 171959 21925492 ~ 21927360 (-)
G178237 NA non-coding downstream 266330 21832741 ~ 21832989 (-)
G178236 NA non-coding downstream 282917 21816127 ~ 21816402 (-)
G178201 NA non-coding downstream 583334 21515588 ~ 21515985 (-)
G178195 NA non-coding downstream 623677 21475230 ~ 21475642 (-)
G178300 NA non-coding upstream 180827 22280345 ~ 22319081 (-)
G178309 NA non-coding upstream 234104 22333622 ~ 22334656 (-)
G178405 NA non-coding upstream 254356 22353874 ~ 22354311 (-)
LOC111195068 NA non-coding upstream 285987 22385505 ~ 22396206 (-)
G178423 sec31a non-coding upstream 339645 22439163 ~ 22441394 (-)
G178267 grin3a,LOC107710005,LOC107750958 other downstream 165488 21933519 ~ 21933831 (-)
G178173 NA other downstream 803486 21291522 ~ 21295833 (-)
LOC111194984 sh2d4a other downstream 2360006 19738649 ~ 19739313 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 2971196 19119786 ~ 19128123 (-)
G177704 NA other downstream 3007173 19091146 ~ 19092146 (-)
G178426 NA other upstream 355979 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 401800 22501318 ~ 22509783 (-)
G178450 NA other upstream 572614 22672132 ~ 22672683 (-)
LOC111195067 NA other upstream 835972 22935490 ~ 22941664 (-)
sh2d4a sh2d4a other upstream 845643 22945161 ~ 22957226 (-)

Expression


Co-expression Network