G178280


Basic Information

Item Value
gene id G178280
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22100040 ~ 22101283 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241502
tccccctcttgggctagcgcgcggttacctttgactgctgtactgcctctcggctgtggctcagggtagctagtttccactgtagctccgtggccagaacaaggtgccggtaaactttcctttccacccgttctggggtaatagcacaaactgtttctttttagcgcccacttctaagtaaagttaacctcttaacacgcgctggcccaccggcgggccagaaatatttaatatttcataactggctgtgtttctgaatagttatgaacagttacaggttcaatatagacatccaatataccattttaaagcttagaatctctgcttttgagctatttagcctatttagcggaatatcctttcagaaaataaacatttagggcgaaatatgccttggttatgattttaataattcataactctcatatttgcgtttatcgttcgtccatatttcatcgaatgcggtcatgtcatacaccattcgaaccgtctggctctccggattccagaactgtgcttttactgtaggatgtatgtttcatgaattagagctgcgtcagagcgcatgtttccagtaataaaaggctctccttttgtcctggggtaacctccggtcactgccgccaccccccgaacacacacccgcgctcagccacaggtcctaccttcaaaacgcgtccagactaaagagaatccatcaatccagtctcctgtaatccacagttatatccaaacagcgctggaaatcacttcatccagaaatgaaacttatccaatctttatctctgttttaaaaccgttttattcaccgaattcggcacaacacgctattatagtcagaagcctcgcggagtaatgcggtacttgctgtgcttcaacataatattatggtctgtcggagcgttgcggctaccgttgtcaggagcgtcgcggagtaatacgtacttgctgtgcttcaacataatattatggtctgtcggagcgttgcggctaccgttgtcaggagcgtcgcggagtaatacgtacttgctgtgcttcaacataatattatggtctgtcggagcgttgcggctaccgttgtcaggagcgtcgcggagtaatacgtacttgctgtgcttgttgatttattgctcagagatgttgttatttttcacagatattgtgaaggatttattgctcagagttattgttactgatataaataaagtttcatttagtgcgccttataatccagtgcgccttgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241502 True 1244 lncRNA 0.45 1 22100040 22101283

Neighbor

gene id symbol gene type direction distance location
grin3a grin3a,LOC107750958,LOC107710005,LOC107702562,LOC107554227,LOC104941214 coding upstream 135332 21932331 ~ 21964708 (+)
musk musk coding upstream 730766 21326212 ~ 21369274 (+)
cst8 NA coding upstream 804191 21285246 ~ 21295849 (+)
LOC103023250 NA coding upstream 841453 21203262 ~ 21258587 (+)
LOC103022731 cntfr,LOC107554853,LOC107756542,LOC107738850,LOC107554231 coding upstream 922582 20842037 ~ 21177458 (+)
LOC103047607 LOC103047607 coding downstream 221437 22322720 ~ 22334543 (+)
sec31a sec31a coding downstream 320079 22421362 ~ 22453611 (+)
tmem150c tmem150c,LOC107558260 coding downstream 367154 22468437 ~ 22476305 (+)
LOC103022635 mat2al,LOC108440739,LOC108276530,LOC107732036,LOC107653488,LOC107573852,LOC102202437 coding downstream 408605 22509888 ~ 22515585 (+)
LOC111195066 NA coding downstream 418136 22519419 ~ 22528083 (+)
G178278 NA non-coding upstream 482 22099319 ~ 22099558 (+)
G178254 NA non-coding upstream 127006 21972714 ~ 21973034 (+)
G178233 NA non-coding upstream 400407 21699433 ~ 21699633 (+)
G178202 NA non-coding upstream 553072 21540577 ~ 21546968 (+)
G178105 NA non-coding upstream 835056 21237139 ~ 21264984 (+)
G178282 NA non-coding downstream 1466 22102749 ~ 22103046 (+)
G178289 NA non-coding downstream 211887 22313170 ~ 22314294 (+)
G178310 NA non-coding downstream 238696 22339979 ~ 22386661 (+)
LOC111195069 NA non-coding downstream 279327 22380610 ~ 22381578 (+)
G178320 NA non-coding downstream 289915 22391198 ~ 22396197 (+)
ier3ip1 ier3ip1,LOC106633120 other upstream 1700875 20396377 ~ 20399165 (+)
G177950 NA other upstream 1960476 20138822 ~ 20139564 (+)
LOC103043854 NA other upstream 2003329 20089238 ~ 20096711 (+)
LOC103042206 LOC108428882 other upstream 2324249 19750942 ~ 19775791 (+)
LOC111194983 NA other upstream 2377480 19720301 ~ 19722560 (+)
LOC103046694 LOC108440723,LOC108277161 other downstream 25838 22127121 ~ 22315307 (+)
LOC103025565 scd5 other downstream 355036 22456319 ~ 22465729 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other downstream 385540 22486823 ~ 22491503 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other downstream 392157 22493440 ~ 22502159 (+)
G178352 NA other downstream 443357 22544640 ~ 22546130 (+)

Expression


Co-expression Network