G178289


Basic Information

Item Value
gene id G178289
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22313170 ~ 22314294 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241522
cattgcaccagtaagagcagagtgtgaaggttcaattagcagggtaagagcacagttctgctcaaaatattgcaatgcacacaacattatgggtgacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctggagcatctgtgaccaagacagcaagtctttgtgatgtatcaagagccacggtatccagggtaatgtcagcgtaccaccaagaaggaccaaccacatccaacaggattaactgtggacgctgcaagaggaagctgtctgaaagggatgtacaggtgctaacccggattgtatccaaaaaactaaaaccacggctgatcaaatcatgacagaattcaatgtgcacctcaactctcttgtttccaccagaactgtctgtcgggacattaagttattgtggtctaaaaccaggtgtttcagtttcattgtccaaccactgtttatataatataatggatTAGTTATGAAGTAGTTTTAAACCATTGTCTTCCCAGAGAGTCTAGATATATGCTTCTTTCCTAGTGGTGTttatttatattagttttagGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241522 True 571 lncRNA 0.42 2 22313170 22314294

Neighbor

gene id symbol gene type direction distance location
grin3a grin3a,LOC107750958,LOC107710005,LOC107702562,LOC107554227,LOC104941214 coding upstream 348462 21932331 ~ 21964708 (+)
musk musk coding upstream 943896 21326212 ~ 21369274 (+)
cst8 NA coding upstream 1017321 21285246 ~ 21295849 (+)
LOC103023250 NA coding upstream 1054583 21203262 ~ 21258587 (+)
LOC103022731 cntfr,LOC107554853,LOC107756542,LOC107738850,LOC107554231 coding upstream 1135712 20842037 ~ 21177458 (+)
LOC103047607 LOC103047607 coding downstream 8426 22322720 ~ 22334543 (+)
sec31a sec31a coding downstream 107068 22421362 ~ 22453611 (+)
tmem150c tmem150c,LOC107558260 coding downstream 154143 22468437 ~ 22476305 (+)
LOC103022635 mat2al,LOC108440739,LOC108276530,LOC107732036,LOC107653488,LOC107573852,LOC102202437 coding downstream 195594 22509888 ~ 22515585 (+)
LOC111195066 NA coding downstream 205125 22519419 ~ 22528083 (+)
G178282 NA non-coding upstream 210124 22102749 ~ 22103046 (+)
G178280 NA non-coding upstream 211887 22100040 ~ 22101283 (+)
G178278 NA non-coding upstream 213612 22099319 ~ 22099558 (+)
G178254 NA non-coding upstream 340136 21972714 ~ 21973034 (+)
G178233 NA non-coding upstream 613537 21699433 ~ 21699633 (+)
G178310 NA non-coding downstream 25685 22339979 ~ 22386661 (+)
LOC111195069 NA non-coding downstream 66316 22380610 ~ 22381578 (+)
G178320 NA non-coding downstream 76904 22391198 ~ 22396197 (+)
G178344 NA non-coding downstream 202237 22516531 ~ 22524073 (+)
G178368 tln1 non-coding downstream 290701 22604995 ~ 22605572 (+)
ier3ip1 ier3ip1,LOC106633120 other upstream 1914005 20396377 ~ 20399165 (+)
G177950 NA other upstream 2173606 20138822 ~ 20139564 (+)
LOC103043854 NA other upstream 2216459 20089238 ~ 20096711 (+)
LOC103042206 LOC108428882 other upstream 2537379 19750942 ~ 19775791 (+)
LOC111194983 NA other upstream 2590610 19720301 ~ 19722560 (+)
LOC103025565 scd5 other downstream 142025 22456319 ~ 22465729 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other downstream 172529 22486823 ~ 22491503 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other downstream 179146 22493440 ~ 22502159 (+)
G178352 NA other downstream 230346 22544640 ~ 22546130 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other downstream 374707 22689001 ~ 22709557 (+)

Expression


Co-expression Network