G178310


Basic Information

Item Value
gene id G178310
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22339979 ~ 22386661 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241549
tttttttttttttttttttataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattttttt
>TU241551
tgttttataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatct
>TU241555
aaaaaaaaaaaaaaaaacttttataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241549 False 397 lncRNA 0.00 2 22348978 22385553
TU241551 True 455 lncRNA 0.00 2 22385170 22386661
TU241555 False 448 lncRNA 0.00 3 22339979 22385723

Neighbor

gene id symbol gene type direction distance location
LOC103047607 LOC103047607 coding upstream 5436 22322720 ~ 22334543 (+)
grin3a grin3a,LOC107750958,LOC107710005,LOC107702562,LOC107554227,LOC104941214 coding upstream 375271 21932331 ~ 21964708 (+)
musk musk coding upstream 970705 21326212 ~ 21369274 (+)
cst8 NA coding upstream 1044130 21285246 ~ 21295849 (+)
LOC103023250 NA coding upstream 1081392 21203262 ~ 21258587 (+)
sec31a sec31a coding downstream 34701 22421362 ~ 22453611 (+)
tmem150c tmem150c,LOC107558260 coding downstream 81776 22468437 ~ 22476305 (+)
LOC103022635 mat2al,LOC108440739,LOC108276530,LOC107732036,LOC107653488,LOC107573852,LOC102202437 coding downstream 123227 22509888 ~ 22515585 (+)
LOC111195066 NA coding downstream 132758 22519419 ~ 22528083 (+)
ankrd55 ankrd55,LOC107670032,LOC107737049,LOC107702571 coding downstream 452847 22839508 ~ 22863383 (+)
G178289 NA non-coding upstream 25685 22313170 ~ 22314294 (+)
G178282 NA non-coding upstream 236933 22102749 ~ 22103046 (+)
G178280 NA non-coding upstream 238696 22100040 ~ 22101283 (+)
G178278 NA non-coding upstream 240421 22099319 ~ 22099558 (+)
G178254 NA non-coding upstream 366945 21972714 ~ 21973034 (+)
G178320 NA non-coding downstream 4537 22391198 ~ 22396197 (+)
G178344 NA non-coding downstream 129870 22516531 ~ 22524073 (+)
G178368 tln1 non-coding downstream 218334 22604995 ~ 22605572 (+)
G178381 tln1 non-coding downstream 243250 22629911 ~ 22671830 (+)
G178392 map3k1,LOC107670047 non-coding downstream 321087 22707748 ~ 22708401 (+)
LOC103046694 LOC108440723,LOC108277161 other upstream 24672 22127121 ~ 22315307 (+)
ier3ip1 ier3ip1,LOC106633120 other upstream 1940814 20396377 ~ 20399165 (+)
G177950 NA other upstream 2200415 20138822 ~ 20139564 (+)
LOC103043854 NA other upstream 2243268 20089238 ~ 20096711 (+)
LOC103042206 LOC108428882 other upstream 2564188 19750942 ~ 19775791 (+)
LOC103025565 scd5 other downstream 69658 22456319 ~ 22465729 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other downstream 100162 22486823 ~ 22491503 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other downstream 106779 22493440 ~ 22502159 (+)
G178352 NA other downstream 157979 22544640 ~ 22546130 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other downstream 302340 22689001 ~ 22709557 (+)

Expression


Co-expression Network