G178320


Basic Information

Item Value
gene id G178320
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22391198 ~ 22396197 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241571
tggtacctGACTGAGGTGTGCCTGATGTGGTGGCTGTGTCGTGGTGTATACTTAGCCAGGGGTCGTAGAGCAGATGGTGGAGAGATGATCTGAGACTTCTTTGAGGTGATCTCCGTGCTGGTGTTGAAGGgtcacctctcacacacagcaggaTGATTCCTATCTGCAACACTGTGGAGGATTTGGCCTCATGGGTAAACCACTCATGAGGAAGGTCCAGAAGATGAAGGCGTGGTTCCTAACTGTACATCTGAACCAGGATGTTCTATGGCTTGAGGTCACAGTGCAGAACCCCTCTGGCATGGACCTCAATCACGCCTTCAActtctgttcttctgGACCTTCCTCATGAGTGGTTTACCCATGAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241571 True 370 lncRNA 0.51 4 22391198 22396197

Neighbor

gene id symbol gene type direction distance location
LOC103047607 LOC103047607 coding upstream 56655 22322720 ~ 22334543 (+)
grin3a grin3a,LOC107750958,LOC107710005,LOC107702562,LOC107554227,LOC104941214 coding upstream 426490 21932331 ~ 21964708 (+)
musk musk coding upstream 1021924 21326212 ~ 21369274 (+)
cst8 NA coding upstream 1095349 21285246 ~ 21295849 (+)
LOC103023250 NA coding upstream 1132611 21203262 ~ 21258587 (+)
sec31a sec31a coding downstream 25165 22421362 ~ 22453611 (+)
tmem150c tmem150c,LOC107558260 coding downstream 72240 22468437 ~ 22476305 (+)
LOC103022635 mat2al,LOC108440739,LOC108276530,LOC107732036,LOC107653488,LOC107573852,LOC102202437 coding downstream 113691 22509888 ~ 22515585 (+)
LOC111195066 NA coding downstream 123222 22519419 ~ 22528083 (+)
ankrd55 ankrd55,LOC107670032,LOC107737049,LOC107702571 coding downstream 443311 22839508 ~ 22863383 (+)
G178310 NA non-coding upstream 4537 22339979 ~ 22386661 (+)
LOC111195069 NA non-coding upstream 9620 22380610 ~ 22381578 (+)
G178289 NA non-coding upstream 76904 22313170 ~ 22314294 (+)
G178282 NA non-coding upstream 288152 22102749 ~ 22103046 (+)
G178280 NA non-coding upstream 289915 22100040 ~ 22101283 (+)
G178344 NA non-coding downstream 120334 22516531 ~ 22524073 (+)
G178368 tln1 non-coding downstream 208798 22604995 ~ 22605572 (+)
G178381 tln1 non-coding downstream 233714 22629911 ~ 22671830 (+)
G178392 map3k1,LOC107670047 non-coding downstream 311551 22707748 ~ 22708401 (+)
G178394 map3k1 non-coding downstream 317540 22713737 ~ 22720806 (+)
LOC103046694 LOC108440723,LOC108277161 other upstream 75891 22127121 ~ 22315307 (+)
ier3ip1 ier3ip1,LOC106633120 other upstream 1992033 20396377 ~ 20399165 (+)
G177950 NA other upstream 2251634 20138822 ~ 20139564 (+)
LOC103043854 NA other upstream 2294487 20089238 ~ 20096711 (+)
LOC103042206 LOC108428882 other upstream 2615407 19750942 ~ 19775791 (+)
LOC103025565 scd5 other downstream 60122 22456319 ~ 22465729 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other downstream 90626 22486823 ~ 22491503 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other downstream 97243 22493440 ~ 22502159 (+)
G178352 NA other downstream 148443 22544640 ~ 22546130 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other downstream 292804 22689001 ~ 22709557 (+)

Expression


Co-expression Network