G178344


Basic Information

Item Value
gene id G178344
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22516531 ~ 22524073 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241604
TTTGTGTATGCCCAAGAATACTCTGATTTATAGTTTACATGCACTTGGAAATACAATTCAAATACAAATCCAGCTCTCTCTATTAGATTTCGTAATTAGATTTTTACACCTTAATTCGATCTGAGAAATCAAAGTATACTGTTTACATGACTACTTGAATAATAAGATAAATGCGGTATTCTGTCAATGAACTGATTTTTTGTGCATGTAAACTCATTCATTGTCCTACTCATGAGGTAGTGTTGTGATGAAGGTCTCTGTGTCCGAATCAAAAAAAGGCACAGAATAACGATGTTTTCAATGTATGGACTAGATATACTGCTATATGGAAGTACATGTTTAGCTTTGTTGGCTATATATTGGCATTTCCCCAAAtaacatattctttttttttctgaattatttataaaaaggcTTTATTACTAAACTTTGTTTCAGCCTTGGCTGGCTGCCTTCCTGCTATACATTTCAGACACAGACTTATTTCTGCATTCTTCTTTTAGAGTCATTCTTATGATTATCTCTAAACTTAcagctgctgttttttattattaatttagggAGAGATACATTTGACTGTTGGGGCATTAGTTGGCGATAGCACCACTGTGAAGGGTTTTTtcaaatctatttttatataaatcatttttaatacttttataatttgttacattttgtaattttaataaaatacatgtttgTCGTGAGATTTCTGCAAAAATAAACCAGAACACTCCAT

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU241604 True 739 lncRNA 0.31 2 22516531 22524073

Neighbor

gene id symbol gene type direction distance location
LOC103022635 mat2al,LOC108440739,LOC108276530,LOC107732036,LOC107653488,LOC107573852,LOC102202437 coding upstream 946 22509888 ~ 22515585 (+)
tmem150c tmem150c,LOC107558260 coding upstream 40226 22468437 ~ 22476305 (+)
sec31a sec31a coding upstream 62920 22421362 ~ 22453611 (+)
LOC103047607 LOC103047607 coding upstream 181988 22322720 ~ 22334543 (+)
grin3a grin3a,LOC107750958,LOC107710005,LOC107702562,LOC107554227,LOC104941214 coding upstream 551823 21932331 ~ 21964708 (+)
ankrd55 ankrd55,LOC107670032,LOC107737049,LOC107702571 coding downstream 315435 22839508 ~ 22863383 (+)
il6st NA coding downstream 341068 22865141 ~ 22880314 (+)
slc38a9 slc38a9,LOC107670042,LOC107564110,LOC107740785,LOC107566906,LOC107715861 coding downstream 384720 22908793 ~ 22928244 (+)
LOC111194992 NA coding downstream 440920 22964993 ~ 22966528 (+)
LOC111194985 NA coding downstream 446349 22970422 ~ 22973005 (+)
G178320 NA non-coding upstream 120334 22391198 ~ 22396197 (+)
G178310 NA non-coding upstream 129870 22339979 ~ 22386661 (+)
LOC111195069 NA non-coding upstream 134953 22380610 ~ 22381578 (+)
G178289 NA non-coding upstream 202237 22313170 ~ 22314294 (+)
G178282 NA non-coding upstream 413485 22102749 ~ 22103046 (+)
G178368 tln1 non-coding downstream 80922 22604995 ~ 22605572 (+)
G178381 tln1 non-coding downstream 105838 22629911 ~ 22671830 (+)
G178392 map3k1,LOC107670047 non-coding downstream 183675 22707748 ~ 22708401 (+)
G178394 map3k1 non-coding downstream 189664 22713737 ~ 22720806 (+)
G178472 NA non-coding downstream 406150 22930223 ~ 22930945 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 14372 22493440 ~ 22502159 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other upstream 25028 22486823 ~ 22491503 (+)
LOC103025565 scd5 other upstream 50802 22456319 ~ 22465729 (+)
LOC103046694 LOC108440723,LOC108277161 other upstream 201224 22127121 ~ 22315307 (+)
ier3ip1 ier3ip1,LOC106633120 other upstream 2117366 20396377 ~ 20399165 (+)
G178352 NA other downstream 20567 22544640 ~ 22546130 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other downstream 164928 22689001 ~ 22709557 (+)
G178485 NA other downstream 439374 22963447 ~ 22964989 (+)
LOC103032894 LOC108424565 other downstream 1923719 24447792 ~ 24454622 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 2720088 25244161 ~ 25257469 (+)

Expression


Co-expression Network