G178352


Basic Information

Item Value
gene id G178352
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22544640 ~ 22546130 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241624
gcCAGctacctaaataaataaataaataaatatagcagcacattcataataaaaacaaattattatatgCAGGATCATAAGAAAcagattttagttttagtctttgGAACACTTTGCTAGAGAGACTACTGTAGCACAGTTGTAATACACTGTTGTAGGTCAGGAGGGCTCATTAAAATCcagtttaaatatatgtaacaaCTAATTTAAAGCTGGCCATGGCATCACTTCTAGCCTGAGTAAATGCCTGGTCAAACATAAAATACATCTAAAAAAGGTATTATCTGACAGCCTGAAAGAGGACAGTTTTGGGAGAGGAGGAGCTGGTAAAGAGCAGTTTTACTTTGTGTGGTGTGTAAAATGTcctaaataagtaataaaataagACATTACATTTTGTGTTATTATACAGAGAATAAAGCACCAAAAAAGTACTGAGTTCTTTCATTACAGTTTGAAACGTGATCAGTACCGAACACTGAAGGTTAATAATTTTCCTATCCAACTTGAAGGAAAATGATGGTGTATTTATAAGCTTTTAAACAGTATggtatattttaaatgattaatgtaCATTTAGGTATGTCTTGAGCAAAAGTTATTTGTCTTTGCAGCCTGTCAAGTTTTTCTCATGCCTTTTTATCTTATAAAGCTGAAACCAGCTGTGATTACATTTTATgccaaatatatatatatattataccaaACAAAGTAAGCGCTGACCCACAATTCATTTCACAATTTACCCACTGACACAGTTAATGATTTCACTCTACACACCTTGCAGTGTGCCGTCTCTAGCAAGGCTGAGTGTCGGCTACTAAAACTAGCATAAATCAGTACAAGCAGCCTTACTGCCAGTTTCTGCTCATCACAGTTAGTCATTTCAGATAACAGTACACAAGCGGAGAACTGAAGAGCAGCTTCATCTGGAGAGGCTCAGCTGTTGAGCTCAGCTAGAACTACTCTCAGCTCATTACTGAGAATGTGGTTTTTCTCCAGCGTCATTTGGCAGCGATCTGTGGCCACAACATCATCGAGCACCGAGTACAGGCCGAGCCAGTGCCAAGAGGATGGAGGGACAGGAAAAggaggaaaggaaaaaagagagagagagaaagaaaaggagggaGGGGTTAGTGCAGTTAAACAGCAGAAGACATCGAAGAGTAGAGCAGGAGCGAGGGCATCAACAACTGGAGATTCTAGAAAAGGGAGGCAGAACTGCtatacattcattttaatgtacactgatcagccattaCATCAAAACCACTGCCAGGACAAATTAATTTTCattgatattaaatatcataGCTATTAAATAGAATTAATTTTTCaattgttttctttcatctgttttctctttttttttgttctattttactTATAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241624 True 1394 TUCP 0.37 3 22544640 22546130

Neighbor

gene id symbol gene type direction distance location
LOC111195066 NA coding upstream 16557 22519419 ~ 22528083 (+)
LOC103022635 mat2al,LOC108440739,LOC108276530,LOC107732036,LOC107653488,LOC107573852,LOC102202437 coding upstream 29055 22509888 ~ 22515585 (+)
tmem150c tmem150c,LOC107558260 coding upstream 68335 22468437 ~ 22476305 (+)
sec31a sec31a coding upstream 91029 22421362 ~ 22453611 (+)
LOC103047607 LOC103047607 coding upstream 210097 22322720 ~ 22334543 (+)
ankrd55 ankrd55,LOC107670032,LOC107737049,LOC107702571 coding downstream 293378 22839508 ~ 22863383 (+)
il6st NA coding downstream 319011 22865141 ~ 22880314 (+)
slc38a9 slc38a9,LOC107670042,LOC107564110,LOC107740785,LOC107566906,LOC107715861 coding downstream 362663 22908793 ~ 22928244 (+)
LOC111194992 NA coding downstream 418863 22964993 ~ 22966528 (+)
LOC111194985 NA coding downstream 424292 22970422 ~ 22973005 (+)
G178344 NA non-coding upstream 20567 22516531 ~ 22524073 (+)
G178320 NA non-coding upstream 148443 22391198 ~ 22396197 (+)
G178310 NA non-coding upstream 157979 22339979 ~ 22386661 (+)
LOC111195069 NA non-coding upstream 163062 22380610 ~ 22381578 (+)
G178289 NA non-coding upstream 230346 22313170 ~ 22314294 (+)
G178368 tln1 non-coding downstream 58865 22604995 ~ 22605572 (+)
G178381 tln1 non-coding downstream 83781 22629911 ~ 22671830 (+)
G178392 map3k1,LOC107670047 non-coding downstream 161618 22707748 ~ 22708401 (+)
G178394 map3k1 non-coding downstream 167607 22713737 ~ 22720806 (+)
G178472 NA non-coding downstream 384093 22930223 ~ 22930945 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 42481 22493440 ~ 22502159 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other upstream 53137 22486823 ~ 22491503 (+)
LOC103025565 scd5 other upstream 78911 22456319 ~ 22465729 (+)
LOC103046694 LOC108440723,LOC108277161 other upstream 229333 22127121 ~ 22315307 (+)
ier3ip1 ier3ip1,LOC106633120 other upstream 2145475 20396377 ~ 20399165 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other downstream 142871 22689001 ~ 22709557 (+)
G178485 NA other downstream 417317 22963447 ~ 22964989 (+)
LOC103032894 LOC108424565 other downstream 1901662 24447792 ~ 24454622 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 2698031 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 4284507 26830637 ~ 26879083 (+)

Expression


Co-expression Network