G178381 (tln1)


Basic Information

Item Value
gene id G178381
gene name tln1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22629911 ~ 22671830 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241655
ATGTGTCCCGTGTGCATCTGGCCACTAGTGATCTGCTGCTTGGCCTGAGGTATGGATCCCATCTGGAAGCTTCCTTGACCACCAGCACCTGAACGCATGATGACCGGCATAGCCACAGAGCCTGTCTCCACCTTCCCCACCTtgttgaactgctgctgcatcaCTGTTGACTTTAGGTGAAACAGAATCTTCCAGCATGGTCGATTCCTCGTCTCCTTCTAGGCCAAAGTGGTCTTTGCTCTTTTTCTTTTTAAGGATGATGTCAATGTAGCCAGCAATCAGCTGTGCAATCTGCTCTCCTTCAGTGGTCTGGACTGAGTAGTAGCCATCCTGATAATCTCCAAAATCCAGAGTGAAGCTCTTTGGGGAAGCAGCCCAACGCTTGATGTTTGTCAGGCTCCACTCTTGCATCACCTCCTTGGTCTTCTCGTCCACTCTCATCACGCTCTCCTTGGTGATGCCCAGCAGGCGAGGGACCAGCTTGTTCTTGCCCTTCATTTTCTCctttacTAGGAAGAAGGACACTCCATAGGTTTTGAGAGATCGGGCCAGCTTGACATAGCTGACTTTGGCCTCAATCTCAGTCATATTTTGGCAGTTTTTGTGTGCCTGAAAGATCTTTTTCTCGCCTTTGTTCTTGATGTACTCTTTGGGCAGGAATTCTTTCAAATCAAGGAATCCTGGTTTGTGTTTAGATTCATTGTGGTCACCGAACTGGATCTGGCACTGATAACCGGCGAACTCGCAAGCCTTGTCAAAGGACACAGGGTGAGATCCATTCAGAATATCATCTCGAGCCTGTACATATAGTAGATTAAGCTGAACTGGATCTCTGGAGTCCACATTCTGGTCAGAGTAGAAGAACTTTCTCCTGAGGAGCAACATCTCTGTCTCCTCCACCCCCTGCTCACGAAGCGTCCGTCCATGATCCAACCAGTTTAactcatcatcagtgTGAAGCTTCTGCTTAAGTTTCTCCATCTTTTTGTCATCCCTCAGAAGGGTTTTGTCTCTCTTCAGTGTTCCTGTTgtctcctccttcttctcttcACCAATATCTCGCACCAACGAATACTCATCATAGTTTGTGATGCCTATTCTGGCACAAATGGTCATGAGCATGTCACTGACAATTTTAGAGTCGTCCACCATGACGGTTTTCACCGTCCCATCCAACATGCGGATCTTGAGCGGCCTCTGTTTCTTCTTGTAGTCGAGTGTGTCCCCATTTCTCAGCATGTAGTAGTCCAAGGCTTTCCCTGCTTCCAGCCAAATGCCTTTCTTTGGGTCTTCATCTGACAGGAACAGGCCATAATCGTTGGGCTGGCCGAGCTGTGCTTCTGGAACTCTCTCCCTGATGATTCGACAAGCGTCATACACCATGGTGGAGGGCTCAAACTGCATAGTTTTCACCACATTCCCCACGCCGATCTTTAGTGACAGCGCCACCATGTCTGCGCTTCTGTGCCTACGTCACTGCTACacCTGATGGAATCTTCTACAGATGGGAGTGGGCCACCCAGAGGGATGTGGCTGTCTGGGGTCTTCTAATGTATCTCCCCGCTTTCCTCGACCTCCGGCCGTCCACCTTCGGACTACAGTCGGTGTAAATATAGTCCCGTTCCCCAGTCAAAGTGGTGTAAGTTCCAGAAATGTTGGTAAAATGTCAGATTCTGGgttttttccttgcctccgttTGTCTGGTTGAGGCAGCGTCAAAGC

Function

symbol description
tln1 Predicted to enable integrin binding activity. Acts upstream of or within animal organ development and sarcomere organization. Predicted to be located in several cellular components, including cytoplasm; cytoskeleton; and ruffle. Predicted to be active in focal adhesion and plasma membrane. Is expressed in several structures, including adaxial cell; cardiovascular system; cranium; musculature system; and nervous system. Orthologous to human TLN1 (talin 1).

NR:

description
talin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241655 True 1722 lncRNA 0.49 14 22629911 22671830

Neighbor

gene id symbol gene type direction distance location
LOC111195066 NA coding upstream 101828 22519419 ~ 22528083 (+)
LOC103022635 mat2al,LOC108440739,LOC108276530,LOC107732036,LOC107653488,LOC107573852,LOC102202437 coding upstream 114326 22509888 ~ 22515585 (+)
tmem150c tmem150c,LOC107558260 coding upstream 153606 22468437 ~ 22476305 (+)
sec31a sec31a coding upstream 176300 22421362 ~ 22453611 (+)
LOC103047607 LOC103047607 coding upstream 295368 22322720 ~ 22334543 (+)
ankrd55 ankrd55,LOC107670032,LOC107737049,LOC107702571 coding downstream 167678 22839508 ~ 22863383 (+)
il6st NA coding downstream 193311 22865141 ~ 22880314 (+)
slc38a9 slc38a9,LOC107670042,LOC107564110,LOC107740785,LOC107566906,LOC107715861 coding downstream 236963 22908793 ~ 22928244 (+)
LOC111194992 NA coding downstream 293163 22964993 ~ 22966528 (+)
LOC111194985 NA coding downstream 298592 22970422 ~ 22973005 (+)
G178368 tln1 non-coding upstream 24339 22604995 ~ 22605572 (+)
G178344 NA non-coding upstream 105838 22516531 ~ 22524073 (+)
G178320 NA non-coding upstream 233714 22391198 ~ 22396197 (+)
G178310 NA non-coding upstream 243250 22339979 ~ 22386661 (+)
LOC111195069 NA non-coding upstream 248333 22380610 ~ 22381578 (+)
G178392 map3k1,LOC107670047 non-coding downstream 35918 22707748 ~ 22708401 (+)
G178394 map3k1 non-coding downstream 41907 22713737 ~ 22720806 (+)
G178472 NA non-coding downstream 258393 22930223 ~ 22930945 (+)
G178474 NA non-coding downstream 263653 22935483 ~ 22941621 (+)
G178476 NA non-coding downstream 268774 22940604 ~ 22941149 (+)
G178352 NA other upstream 83781 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 127752 22493440 ~ 22502159 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other upstream 138408 22486823 ~ 22491503 (+)
LOC103025565 scd5 other upstream 164182 22456319 ~ 22465729 (+)
LOC103046694 LOC108440723,LOC108277161 other upstream 314604 22127121 ~ 22315307 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other downstream 17171 22689001 ~ 22709557 (+)
G178485 NA other downstream 291617 22963447 ~ 22964989 (+)
LOC103032894 LOC108424565 other downstream 1775962 24447792 ~ 24454622 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 2572331 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 4158807 26830637 ~ 26879083 (+)

Expression


Co-expression Network