G178388 (hmgcs1,LOC108427280,LOC108277226,LOC107737058)


Basic Information

Item Value
gene id G178388
gene name hmgcs1,LOC108427280,LOC108277226,LOC107737058
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22689001 ~ 22709557 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241665
ACCATCCCAAGAGCTGGACTCCACCCAGTTGACTGCATTGAAAAGTGCAGCAGTTCCTCCATAGCAGGCATTAGTTGTGTCGATGCCCTCCACATCTGTATTTCCCGACTCCTCAAACAGCTGCATTAGTACAGTCTTCACAGACTTGGATTTGTCGATGATGGTCTCTGTGCCCACCTCTAGTCTCCCCACGCTGTCATACGACAGGCAGTTTCTCTCCATAAGCTGCTGCACCACGGTCAGGCACAGAGAGTTAATGTCCTCGCGATCTGAGCAAAAGCCCATTTGCGCCTGGCCGAGCCCGATGGTGTACTTTCCGGCCCCGACGCCGTCAAACTCCTCCAGTTCTGTCTGGTCCACATACTGAGAGGGAATGTAGACCTCCATAGCGATGATGCCCACATCTTTGGGCCAAGCAGCCACATAGTTAGCAGGTAGAGATCCAGGCATGGTGAATGGACTgaaaaagaaaaata

Function

symbol description
hmgcs1 Predicted to enable hydroxymethylglutaryl-CoA synthase activity. Acts upstream of or within animal organ development and oligodendrocyte development. Is expressed in several structures, including digestive system; immature eye; nervous system; pectoral fin musculature; and yolk syncytial layer. Orthologous to several human genes including HMGCS1 (3-hydroxy-3-methylglutaryl-CoA synthase 1).

NR:

description
PREDICTED: hydroxymethylglutaryl-CoA synthase, cytoplasmic-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241665 True 476 TUCP 0.52 2 22689001 22709557

Neighbor

gene id symbol gene type direction distance location
LOC111195066 NA coding upstream 160918 22519419 ~ 22528083 (+)
LOC103022635 mat2al,LOC108440739,LOC108276530,LOC107732036,LOC107653488,LOC107573852,LOC102202437 coding upstream 173416 22509888 ~ 22515585 (+)
tmem150c tmem150c,LOC107558260 coding upstream 212696 22468437 ~ 22476305 (+)
sec31a sec31a coding upstream 235390 22421362 ~ 22453611 (+)
LOC103047607 LOC103047607 coding upstream 354458 22322720 ~ 22334543 (+)
ankrd55 ankrd55,LOC107670032,LOC107737049,LOC107702571 coding downstream 129951 22839508 ~ 22863383 (+)
il6st NA coding downstream 155584 22865141 ~ 22880314 (+)
slc38a9 slc38a9,LOC107670042,LOC107564110,LOC107740785,LOC107566906,LOC107715861 coding downstream 199236 22908793 ~ 22928244 (+)
LOC111194992 NA coding downstream 255436 22964993 ~ 22966528 (+)
LOC111194985 NA coding downstream 260865 22970422 ~ 22973005 (+)
G178381 tln1 non-coding upstream 17171 22629911 ~ 22671830 (+)
G178368 tln1 non-coding upstream 83429 22604995 ~ 22605572 (+)
G178344 NA non-coding upstream 164928 22516531 ~ 22524073 (+)
G178320 NA non-coding upstream 292804 22391198 ~ 22396197 (+)
G178310 NA non-coding upstream 302340 22339979 ~ 22386661 (+)
G178394 map3k1 non-coding downstream 4180 22713737 ~ 22720806 (+)
G178472 NA non-coding downstream 220666 22930223 ~ 22930945 (+)
G178474 NA non-coding downstream 225926 22935483 ~ 22941621 (+)
G178476 NA non-coding downstream 231047 22940604 ~ 22941149 (+)
G178477 NA non-coding downstream 233569 22943126 ~ 22943349 (+)
G178352 NA other upstream 142871 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 186842 22493440 ~ 22502159 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other upstream 197498 22486823 ~ 22491503 (+)
LOC103025565 scd5 other upstream 223272 22456319 ~ 22465729 (+)
LOC103046694 LOC108440723,LOC108277161 other upstream 373694 22127121 ~ 22315307 (+)
G178485 NA other downstream 253890 22963447 ~ 22964989 (+)
LOC103032894 LOC108424565 other downstream 1738235 24447792 ~ 24454622 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 2534604 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 4121080 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 4204193 26913750 ~ 26916344 (+)

Expression


Co-expression Network