G178394 (map3k1)


Basic Information

Item Value
gene id G178394
gene name map3k1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22713737 ~ 22720806 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241671
AAGGCTCAGCCAGCTCTTTGTAGGTCTGAGGGATCTGCTGCACTCCGTAGTGGGGCAGGGAGAAGTCTCCCTCCTGCGACGCCCTCTGGCCTTCAGCATGTGGCGATGATGAAGAAGCAGCGGATGAAGGTACCTGGCTCTGGGAGCGACTTGTAGAGCTTTCCACTGTAGATGCTGGTTCAtgaCTGTAAAAGTCGTGAGACTTCCATTTAGCCCTACACAGAGGGCAGATTAAGGGTTCATGGTTTCTCCGACATTCTTCGGCCCATATAGACATGCAGTGGTGGTGCAGCTTATTCCTGCATCCTTCTTCACACACAGTCAGACTCTCCTCATCCAGCATGTCCAGCAGACAGATTGGACACATCTGCTCTTCTTCGTCCTTcataCTGCTCTCGTTGCTGGATGGCGAGGAGCTGGAGGTGCAGTTTGTGTGGGAGTTGGACATGCGGGAAACAAACTTCTGGATGGTGTTGCGAGACGGGGC

Function

symbol description
map3k1 Predicted to enable ATP binding activity; protein kinase activity; and zinc ion binding activity. Predicted to act upstream of or within protein phosphorylation. Human ortholog(s) of this gene implicated in 46,XY sex reversal 6 and breast cancer. Orthologous to human MAP3K1 (mitogen-activated protein kinase kinase kinase 1).

NR:

description
PREDICTED: mitogen-activated protein kinase kinase kinase 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241671 True 487 lncRNA 0.53 4 22713737 22720806

Neighbor

gene id symbol gene type direction distance location
LOC111195066 NA coding upstream 185654 22519419 ~ 22528083 (+)
LOC103022635 mat2al,LOC108440739,LOC108276530,LOC107732036,LOC107653488,LOC107573852,LOC102202437 coding upstream 198152 22509888 ~ 22515585 (+)
tmem150c tmem150c,LOC107558260 coding upstream 237432 22468437 ~ 22476305 (+)
sec31a sec31a coding upstream 260126 22421362 ~ 22453611 (+)
LOC103047607 LOC103047607 coding upstream 379194 22322720 ~ 22334543 (+)
ankrd55 ankrd55,LOC107670032,LOC107737049,LOC107702571 coding downstream 118702 22839508 ~ 22863383 (+)
il6st NA coding downstream 144335 22865141 ~ 22880314 (+)
slc38a9 slc38a9,LOC107670042,LOC107564110,LOC107740785,LOC107566906,LOC107715861 coding downstream 187987 22908793 ~ 22928244 (+)
LOC111194992 NA coding downstream 244187 22964993 ~ 22966528 (+)
LOC111194985 NA coding downstream 249616 22970422 ~ 22973005 (+)
G178392 map3k1,LOC107670047 non-coding upstream 5336 22707748 ~ 22708401 (+)
G178381 tln1 non-coding upstream 41907 22629911 ~ 22671830 (+)
G178368 tln1 non-coding upstream 108165 22604995 ~ 22605572 (+)
G178344 NA non-coding upstream 189664 22516531 ~ 22524073 (+)
G178320 NA non-coding upstream 317540 22391198 ~ 22396197 (+)
G178472 NA non-coding downstream 209417 22930223 ~ 22930945 (+)
G178474 NA non-coding downstream 214677 22935483 ~ 22941621 (+)
G178476 NA non-coding downstream 219798 22940604 ~ 22941149 (+)
G178477 NA non-coding downstream 222320 22943126 ~ 22943349 (+)
G178482 sh2d4a non-coding downstream 230157 22950963 ~ 22957159 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 4180 22689001 ~ 22709557 (+)
G178352 NA other upstream 167607 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 211578 22493440 ~ 22502159 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other upstream 222234 22486823 ~ 22491503 (+)
LOC103025565 scd5 other upstream 248008 22456319 ~ 22465729 (+)
G178485 NA other downstream 242641 22963447 ~ 22964989 (+)
LOC103032894 LOC108424565 other downstream 1726986 24447792 ~ 24454622 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 2523355 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 4109831 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 4192944 26913750 ~ 26916344 (+)

Expression


Co-expression Network