G178416 (hnrnpdl,LOC107715891,LOC107702595,LOC107653490)


Basic Information

Item Value
gene id G178416
gene name hnrnpdl,LOC107715891,LOC107702595,LOC107653490
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22486845 ~ 22491505 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241717
TCACTGTTTTGATACCCCAATTTTAATATTCCCTTTATCCAAAACTGAAGgaaaaagacaacaaaaacaaatgacATTTCCAAATAAAGATATAAGAACACACCAGTACAACCCTACAGGTTCTACCGCATCAACGCACTGGATAAGAAACTTGGAAACAATATTTACAAGGTCAGACACACTCAATGTCTTCATCTACAGATGACAACCAAATAAAGGTACTTTAAAAACAAGATGCTCTTTGATTAAGAAGGACAGGGTATCCACAAGCTGCCTCCTGGGTACAAACTCAGTCAGCCTCCTCACCATAACTCTTAGCAGGTCATGTCATTTCGTCAATATGGCTGGTAGTTGTTCTGATGATTTCCACCCTCCCTGGAGGCCTTGCCGTAACTGCTGGGCTGacTGTTGTAGTCATCATACCCTTGTCCATATCCGTAATTCTGATAGTTGTAGCCTGAATAGTCGTACCCAGAGTAGCCATTATATCCCTGGTTGTATCCATTGCCATAGCTACCATAGTTTTGTCCGTAATAATTGTTGTAACCCTGGTTGTATCCTTGACCTTGCCCTCCTCTTCCACGACCCCTgaatcctcctcctcttccttctcCAAAGCCCCGGTCACTTCTGCCCTGCTGCTGTCTGTAGACTTCTTTAGGCTGGGCAACTTTAACTTCACACTTTCCACTTCCAATTTGGTGGTATCTGTTTTCCAAAAGCTTCTGAACAGGCTCTTCTTCCACATACGTTACAAAGCAGAATCCTCGCCTCTCATTTGTCTTACCATCCACAGGAAGTTCAATGTTTTCAATAGTTCCGTAATTTCCAAAGTATTCCCGAACTTGTTCCTCTGTTGTTTCTGGATGGAGACCACCAACAAACACCTTTTTGGGAGGTTCCTTCCCCTTCATGGCCTTGGCTCGCTTCGGATCAATAAGCTTACCATCCAGTTTGTGTTCCTTCAGTTCCAGAACCCTGTCCACACTTTCTGCATCCCGGAAGAGCACAAACCCAAAGCCTCGAGAACGGCCAGTCATGGGGTCTGTTTTGATCGTGCAGTCCAACACTTCTCCAAACTTGGACAGGTAGTCTGTTAGGTCTTTCTTGCTGGTGTCCCAACTCAGGCCTCCAATAAACATTTTCCCGTCATCCTGTTGATTCCTGCTCGCGTTGATTTTGGACCCCTCTGGAAACTCGTCGGTGCTGAAGTCGGTACTTTCCTGTTCTGTCTGCATTTTAGAGTGTGTAGGTGTGCGGGGTGACCCTCTGCGGAGCTGCTAAAGCGATTTTATAGCTATAAAAAAGATCCAAACAGCAAACACTCACTGAAATACTGACGCGGCGGATAAAATGGCTGATGG
>TU241718
TCACTGTTTTGATACCCCAATTTTAATATTCCCTTTATCCAAAACTGAAGgaaaaagacaacaaaaacaaatgacATTTCCAAATAAAGATATAAGAACACACCAGTACAACCCTACAGGTTCTACCGCATCAACGCACTGGATAAGAAACTTGGAAACAATATTTACAAGGTCAGACACACTCAATGTCTTCATCTACAGATGACAACCAAATAAAGGTACTTTAAAAACAAGATGCTCTTTGATTAAGAAGGACAGGGTATCCACAAGCTGCCTCCTGGGTACAAACTCAGTCAGCCTCCTCACCTAAAAGAGAGGAGACAGAACAACAATCAATAATTTCTATAACAAGTATTTAACTAAAATGATCACCTTCCATGTTTCTCTGTTTAACATCTTGAGCTGTCGATTTTAAGCTATTAAACACTTCACCATTCAAAATTAAAGATCATATGTACAACTTATGAGTTTCAGAAAGCAGCTCTTCAGCCAGGAAAAGCTTTAGCTCAACTGGGTTGGTGGATAATTGCACCAAAACAGAGCACTTCCAAACAAAGATAATTCACTATCCTATCAGATATAATAGGACTTTTACCAGTCAGTAACTGCATTCGAGTTGGTAGTTTATGAGTCAGCTTTTTATGGCTTCATAAAACTGGTTTACATATGATCTTTATAAGCTATGTTTTAAGGGAAAAGCTTGAGGTGTACCATTTGAAGTTCTCTATGGGTTCTAAAGAAAAAGCAAGCATTATGAGTTTCTGCAGTTTACAGGATTGGAGACCGTTCATAGGAGAacgaaaagaaaaataaataaattaaaatcactGATGCTCCAGAACTGAAATACAAGAAcactaaaattaataaaagagaATACAACAAACAGTTAAATCACTTAGGTTTCACTGTTAAATACCTGtaaaaaattcatttaaaaaactgttaaagAAAGCATTGACAACTTAAGGGAAAATGAGCGATCTCCTTTTTAATGTctgttctttgtttttaaacGCTGGTACAGGAAGTTTGAAGAGACCATACCACAGGACAGCGTTTTCTTGTGCATGCCGTGCTCTCTGCCCGCTATGTGCGACGCCCAGAGAATTTCGTGGTCAGGTGACACACGGCCTGCAATGAAGTCCCCCGCTGGCAGGTACAAACAAGTACAATATCAGAATTAgggaaagaatgaaaaaaaaaaaaataaggaggtGCCCTTACTTTGTACCCTTTAGCAGTACTTTACCTGTTAGCATTGCTATCAACACTATCTTATTTCCTTATGATCACCTGTTAAAAAGCAGGGAGGAAAATGGAAACCAATCTACAGAAAAACGCTTATGTTTTTCTGGAGAGctttaaaaccaaaaataaggcacaccactaacacaagcattattaaattataattaaagatCTATAGACAAATCCCCAAATTACTCAACATGGGGTGCATGATAATGCATACCACTTGTTTTAGGATAATCAGTTTGTGTCTATTGATCTTTAAATTGTATACAAGAGGACAGATGTAAGGCCAAAGATGCAGTCTTACCATAACTCTTAGCAGGTCATGTCATTTCGTCAATATGGCTGGTAGTTGTTCTGATGATTTCCACCCTCCCTGGAGGCCTTGCCGTAACTGCTGGGCTGacctattaaaaatatTGTTGTAGTCATCATACCCTTGTCCATATCCGTAATTCTGATAGTTGTAGCCTGAATAGTCGTACCCAGAGTAGCCATTATATCCCTGGTTGTATCCATTGCCATAGCTACCATAGTTTTGTCCGTAATAATTGTTGTAACCCTGGTTGTATCCTTGACCTTGCCCTcCAAAGCCCCGGTCACTTCTGCCCTGCTGCTGTCTGTAGACTTCTTTAGGCTGGGCAACTTTAACTTCACACTAAAAAACATacccacattaaaaaaaaaagtttaatttagacCTTATTGGACTAGCCATGCTCGTAAATAAACGCAGTAAACCAACCTTTCCACTTCCAATTTGGTGGTATCTGTTTTCCAAAAGCTTCTGAACAGGCTCTTCTTCCACATACGTTACAAAGCAGAATCCTCGCCTCTCATTTGTCTTACCATCCACAGGAAGTTCAATGTTTTCAATCTGTTAGGAACACACATGCCAACCACTTTAGCACTAGCATGGACTCATACAAGTTAACACTTCTGGA
>TU241720
TCACTGTTTTGATACCCCAATTTTAATATTCCCTTTATCCAAAACTGAAGgaaaaagacaacaaaaacaaatgacATTTCCAAATAAAGATATAAGAACACACCAGTACAACCCTACAGGTTCTACCGCATCAACGCACTGGATAAGAAACTTGGAAACAATATTTACAAGGTCAGACACACTCAATGTCTTCATCTACAGATGACAACCAAATAAAGGTACTTTAAAAACAAGATGCTCTTTGATTAAGAAGGACAGGGTATCCACAAGCTGCCTCCTGGGTACAAACTCAGTCAGCCTCCTCACCTAAAAGAGAGGAGACAGAACAACAATCAATAATTTCTATAACAAGTATTTAACTAAAATGATCACCTTCCATGTTTCTCTGTTTAACATCTTGAGCTGTCGATTTTAAGCTATTAAACACTTCACCATTCAAAATTAAAGATCATATGTACAACTTATGAGTTTCAGAAAGCAGCTCTTCAGCCAGGAAAAGCTTTAGCTCAACTGGGTTGGTGGATAATTGCACCAAAACAGAGCACTTCCAAACAAAGATAATTCACTATCCTATCAGATATAATAGGACTTTTACCAGTCAGTAACTGCATTCGAGTTGGTAGTTTATGAGTCAGCTTTTTATGGCTTCATAAAACTGGTTTACATATGATCTTTATAAGCTATGTTTTAAGGGAAAAGCTTGAGGTGTACCATTTGAAGTTCTCTATGGGTTCTAAAGAAAAAGCAAGCATTATGAGTTTCTGCAGTTTACAGGATTGGAGACCGTTCATAGGAGAacgaaaagaaaaataaataaattaaaatcactGATGCTCCAGAACTGAAATACAAGAAcactaaaattaataaaagagaATACAACAAACAGTTAAATCACTTAGGTTTCACTGTTAAATACCTGtaaaaaattcatttaaaaaactgttaaagAAAGCATTGACAACTTAAGGGAAAATGAGCGATCTCCTTTTTAATGTctgttctttgtttttaaacGCTGGTACAGGAAGTTTGAAGAGACCATACCACAGGACAGCGTTTTCTTGTGCATGCCGTGCTCTCTGCCCGCTATGTGCGACGCCCAGAGAATTTCGTGGTCAGGTGACACACGGCCTGCAATGAAGTCCCCCGCTGGCAGGTACAAACAAGTACAATATCAGAATTAgggaaagaatgaaaaaaaaaaaaataaggaggtGCCCTTACTTTGTACCCTTTAGCAGTACTTTACCTGTTAGCATTGCTATCAACACTATCTTATTTCCTTATGATCACCTGTTAAAAAGCAGGGAGGAAAATGGAAACCAATCTACAGAAAAACGCTTATGTTTTTCTGGAGAGctttaaaaccaaaaataaggcacaccactaacacaagcattattaaattataattaaagatCTATAGACAAATCCCCAAATTACTCAACATGGGGTGCATGATAATGCATACCACTTGTTTTAGGATAATCAGTTTGTGTCTATTGATCTTTAAATTGTATACAAGAGGACAGATGTAAGGCCAAAGATGCAGTCTTACCATAACTCTTAGCAGGTCATGTCATTTCGTCAATATGGCTGGTAGTTGTTCTGATGATTTCCACCCTCCCTGGAGGCCTTGCCGTAACTGCTGGGCTGacctattaaaaatTGTTGTAGTCATCATACCCTTGTCCATATCCGTAATTCTGATAGTTGTAGCCTGAATAGTCGTACCCAGAGTAGCCATTATATCCCTGGTTGTATCCATTGCCATAGCTACCATAGTTTTGTCCGTAATAATTGTTGTAACCCTGGTTGTATCCTTGACCTTGCCCTGCACAAAGGAATGTAAATGGTTAGAATCATAGAGGGAAGAACTCAGTTTTAGTACTTTCTGCAAAACCCTCCCTCACAGTGGTTCTCTGTTTTGGCTAATTGTAAATGCACCCATCTCTTCCTCAAAGAACAGTATAACTGCATGTTTTCAATCCAATCAAGCAGCTGTTGGATCAGTTGTTTTCAGACTTGAGTTAAGGGTTTGAGGAGTGATTCTCCTTGGTTGGAATGAAAACCTAAAgccaaaacagaaaatacaactGACTGCTGCTTTAGACAAAAGACTACATACCTCCTCTTCCACGACCCCTgaatcctcctcctcttccttctcCAAAGCCCCGGTCACTTCTGCCCTGCTGCTGTCTGTAGACTTCTTTAGGCTGGGCAACTTTAACTTCACACTAAAAAACATacccacattaaaaaaaaaagtttaatttagacCTTATTGGACTAGCCATGCTCGTAAATAAACGCAGTAAACCAACCTTTCCACTTCCAATTTGGTGGTATCTGTTTTCCAAAAGCTTCTGAACAGGCTCTTCTTCCACATACGTTACAAAGCAGAATCCTCGCCTCTCATTTGTCTTACCATCCACAGGAAGTTCAATGTTTTCAATCTGTTAGGAACACACATGCCAACCACTTTAGCACTAGCATGGACTCATACAAGTTAACACTTCTGGA

Function

symbol description
hnrnpdl Predicted to enable poly(A) binding activity and poly(G) binding activity. Predicted to be involved in regulation of gene expression. Predicted to be located in cytoplasm; nucleus; and viral nucleocapsid. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in autosomal dominant limb-girdle muscular dystrophy type 3. Orthologous to human HNRNPDL (heterogeneous nuclear ribonucleoprotein D like).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241717 False 1364 lncRNA 0.45 8 22486845 22491505
TU241718 False 2198 lncRNA 0.38 3 22488890 22491505
TU241720 True 2529 lncRNA 0.38 2 22488890 22491505

Neighbor

gene id symbol gene type direction distance location
enoph1 enoph1,LOC107702573,LOC107715850,LOC102782295 coding downstream 2076 22478713 ~ 22484769 (-)
snx30 snx30,LOC107569385 coding downstream 109913 22343456 ~ 22376932 (-)
plppr1 plppr1,LOC107653496,LOC107750956,LOC107702599,LOC107710008,LOC106568589 coding downstream 447908 21974507 ~ 22038937 (-)
LOC111194991 NA coding downstream 563830 21922330 ~ 21923015 (-)
epha5 epha5,LOC108428864,LOC107702602 coding downstream 821119 21545217 ~ 21665726 (-)
trnam-cau_23 NA coding upstream 39103 22530608 ~ 22530679 (-)
trnam-cau_24 NA coding upstream 39319 22530824 ~ 22530895 (-)
trnam-cau_25 NA coding upstream 39535 22531040 ~ 22531111 (-)
trnar-ccu_29 NA coding upstream 39613 22531118 ~ 22531190 (-)
trnam-cau_26 NA coding upstream 39781 22531286 ~ 22531357 (-)
G178427 NA non-coding downstream 24571 22460655 ~ 22462274 (-)
G178409 sec31a non-coding downstream 33226 22445592 ~ 22453619 (-)
G178423 sec31a non-coding downstream 45451 22439163 ~ 22441394 (-)
LOC111195068 NA non-coding downstream 90639 22385505 ~ 22396206 (-)
G178405 NA non-coding downstream 132534 22353874 ~ 22354311 (-)
G178417 hnrnpd,LOC108440733,LOC108276832,LOC107702593 non-coding upstream 1951 22493456 ~ 22499247 (-)
G178436 NA non-coding upstream 19544 22511049 ~ 22547980 (-)
G178440 NA non-coding upstream 24156 22515661 ~ 22523609 (-)
G178441 NA non-coding upstream 27959 22519464 ~ 22526911 (-)
G178452 NA non-coding upstream 258008 22749513 ~ 22750079 (-)
G178426 NA other downstream 30066 22455497 ~ 22456779 (-)
G178267 grin3a,LOC107710005,LOC107750958 other downstream 553014 21933519 ~ 21933831 (-)
G178173 NA other downstream 1191012 21291522 ~ 21295833 (-)
LOC111194984 sh2d4a other downstream 2747532 19738649 ~ 19739313 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 3358722 19119786 ~ 19128123 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 9813 22501318 ~ 22509783 (-)
G178450 NA other upstream 180627 22672132 ~ 22672683 (-)
LOC111195067 NA other upstream 443985 22935490 ~ 22941664 (-)
sh2d4a sh2d4a other upstream 453656 22945161 ~ 22957226 (-)
G178982 hint1,LOC107665476 other upstream 2639477 25130982 ~ 25134156 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G419353 NA misc CI01000304 null 2229384 ~ 2236106 (-)
rainbow trout (Oncorhynchus mykiss) G400670 NA non-coding NC_048569.1 CM023223.2 41903359 ~ 41906075 (+)
striped catfish (Pangasianodon hypophthalmus) G383366 NA non-coding NC_047621.1 CM018567.1 8162782 ~ 8163165 (-)