LOC103023660 (LOC103023660,LOC108440734,LOC108276836,LOC106926931)


Basic Information

Item Value
gene id LOC103023660
gene name LOC103023660,LOC108440734,LOC108276836,LOC106926931
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22501318 ~ 22509783 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241723
AGGCGCATGTTGAAACCCGCAGAAGCCTCAAATAGACTCTGTGCTGTGTGCTGTATTTTTTGTGGCagttatagagttatagagttatAAATTTGGGTATGAACTATAAGCTTTTGATTTAGAGGTATTTCGAGAATATAAAGGACATCTGGAAAATACAAACATGTCGGACAAGAGCACACAACCCCAGACACCAAGCAAGATAAATGAAGTACAGGACCAGGTCAATGAAGTCAAAGTTATCATCAAGGATAACATTAACAAAGTgctggagagaggagagaggttagATGACCTGATTGGAAAAACAGATGATCTGCAGGCAACTGCTGACTCTTTCCAAAGGACATCGGCGAGGGTTTCCAGAAAGTTCTGGTGGAAAAATATGAAGATGATGATTATAATCGGAGTGATAGTGCTTATCATTGTCGTGCTGATCATTCTTCTGGCAACAGGAGTGATTCCCTCATAACATAATCACCCTTTCCTGTTTCCTTATTGAGGAGAAACACATGAAGCAGACTGCagcttatatttatatgttcttgttttttttgttaataggTCTTAATTTTTTCAATTGTTTTGTTTCCACATTTTCAATTTCACATGAAATGAAACGTAATGCGTGATGTAAATATAACTGATATAAAAACGTACTTTCTGTAAAAACAattgtatatatacaaaattcCACTCCCTTTTATAGACTTATTTACTTTGAGACTAAGCACTGTGAGTTTATATCACCTTTATTTGCAGATAAAGTAAATCACAAATCAATTTTTCTGTTCTTGAGTTCCATCAGACACTACAAAATTGGAGATTACACTGCTGAAGTTAATTGTTACCTATAGATAGCTTCCTCCAGACCTTTGAAACCTGTATAGCTGTAACTTGTTATTGTAGGTGATTCATTCCAAGTCACTtcctaagaaaaaaaatgaaagaaggaagtttttgattgtattttttttattatttcattttggaCTTTGCATTTtataccatttattttatgaagtaaatatattgtaatagttAGCTTGTATATTCCAATGTCTCACtccaaatgaaatgaaattaaagcTTGCATTCCTGTCTTTCTTTGAATTTGGACAAGACTTTAACTAAACTGATGTTTACCCCAGGAAATACTGACTGGCTTGTAAATACTGTTCATCATGTAAGACAACAGATGATAACACTGGCAATAAAGAGAGTGTGGAATGCTCACAAGGAAGAAACTTATTTcacatacacattttattatttcgtCCATTGCATCTCTCAATAGTTTATGCTATTCTGTAAGCCTAtttgaaattaataataataatattattattactatacgACATCTGtactcatttttttctaataaata
>XM_007241054.3
GTGTGTGCAAATGAGTTCTGAAGCCTTCCTGCCTGTTTCATCAGGCGCATGTTGAAACCCGCAGAAGCCTCAAATAGACTCTGTGCTGTGTGCTGTATTTTTTGTGGCagttatagagttatagagttatAAATTTGGGTATGAACTATAAGCTTTTGATTTAGAGGTATTTCGAGAATATAAAGGACATCTGGAAAATACAAACATGTCGGACAAGAGCACACAACCCCAGACACCAAGCAAGATAAATGAAGTACAGGACCAGGTCAATGAAGTCAAAGTTATCATCAAGGATAACATTAACAAAGTgctggagagaggagagaggttagATGACCTGATTGGAAAAACAGATGATCTGCAGGCAACTGCTGACTCTTTCCAAAGGACATCGGCGAGGGTTTCCAGAAAGTTCTGGTGGAAAAATATGAAGATGATGATTATAATCGGAGTGATAGTGCTTATCATTGTCGTGCTGATCATTCTTCTGGCAACAGGAGTGATTCCCTCATAACATAATCACCCTTTCCTGTTTCCTTATTGAGGAGAAACACATGAAGCAGACTGCagcttatatttatatgttcttgttttttttgttaataggTCTTAATTTTTTCAATTGTTTTGTTTCCACATTTTCAATTTCACATGAAATGAAACGTAATGCGTGATGTAAATATAACTGATATAAAAACGTACTTTCTGTAAAAACAattgtatatatacaaaattcCACTCCCTTTTATAGACTTATTTACTTTGAGACTAAGCACTGTGAGTTTATATCACCTTTATTTGCAGATAAAGTAAATCACAAATCAATTTTTCTGTTCTTGAGTTCCATCAGACACTACAAAATTGGAGATTACACTGCTGAAGTTAATTGTTACCTATAGATAGCTTCCTCCAGACCTTTGAAACCTGTATAGCTGTAACTTGTTATTGTAGGTGATTCATTCCAAGTCACTtcctaagaaaaaaaatgaaagaaggaagtttttgattgtattttttttattatttcattttggaCTTTGCATTTtataccatttattttatgaagtaaatatattgtaatagttAGCTTGTATATTCCAATGTCTCACtccaaatgaaatgaaattaaagcTTGCATTCCTGTCTTTCTTTGAATTTGGACAAGACTTTAACTAAACTGATGTTTACCCCAGGAAATACTGACTGGCTTGTAAATACTGTTCATCATGTAAGACAACAGATGATAACACTGGCAATAAAGAGAGTGTGGAATGCTCACAAGGAAGAAACTTA
>XM_022681265.1
CACACTGTgaggagaataataataataataataatataataatataatattataccgCCTGAAGGATTAAATATAGGAACAGAATACGCTGTGTGAAGAATTACAGTAATGAAAGTCCATTTTTCAGCGGtggataatgtgtgtgtgtgtagcgccGAAGTTGAGTCGGACAAGAGCACACAACCCCAGACACCAAGCAAGATAAATGAAGTACAGGACCAGGTCAATGAAGTCAAAGTTATCATCAAGGATAACATTAACAAAGTgctggagagaggagagaggttagATGACCTGATTGGAAAAACAGATGATCTGCAGGCAACTGCTGACTCTTTCCAAAGGACATCGGCGAGGGTTTCCAGAAAGTTCTGGTGGAAAAATATGAAGATGATGATTATAATCGGAGTGATAGTGCTTATCATTGTCGTGCTGATCATTCTTCTGGCAACAGGAGTGATTCCCTCATAACATAATCACCCTTTCCTGTTTCCTTATTGAGGAGAAACACATGAAGCAGACTGCagcttatatttatatgttcttgttttttttgttaataggTCTTAATTTTTTCAATTGTTTTGTTTCCACATTTTCAATTTCACATGAAATGAAACGTAATGCGTGATGTAAATATAACTGATATAAAAACGTACTTTCTGTAAAAACAattgtatatatacaaaattcCACTCCCTTTTATAGACTTATTTACTTTGAGACTAAGCACTGTGAGTTTATATCACCTTTATTTGCAGATAAAGTAAATCACAAATCAATTTTTCTGTTCTTGAGTTCCATCAGACACTACAAAATTGGAGATTACACTGCTGAAGTTAATTGTTACCTATAGATAGCTTCCTCCAGACCTTTGAAACCTGTATAGCTGTAACTTGTTATTGTAGGTGATTCATTCCAAGTCACTtcctaagaaaaaaaatgaaagaaggaagtttttgattgtattttttttattatttcattttggaCTTTGCATTTtataccatttattttatgaagtaaatatattgtaatagttAGCTTGTATATTCCAATGTCTCACtccaaatgaaatgaaattaaagcTTGCATTCCTGTCTTTCTTTGAATTTGGACAAGACTTTAACTAAACTGATGTTTACCCCAGGAAATACTGACTGGCTTGTAAATACTGTTCATCATGTAAGACAACAGATGATAACACTGGCAATAAAGAGAGTGTGGAATGCTCA

Function

NR:

description
vesicle-associated membrane protein 8-like isoform X2

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241723 True 1387 TUCP 0.33 3 22501318 22506501
XM_007241054.3 False 1293 mRNA 0.35 3 22501454 22506543
XM_022681265.1 False 1235 mRNA 0.34 3 22501469 22509783
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Neighbor

gene id symbol gene type direction distance location
enoph1 enoph1,LOC107702573,LOC107715850,LOC102782295 coding downstream 16549 22478713 ~ 22484769 (-)
snx30 snx30,LOC107569385 coding downstream 124386 22343456 ~ 22376932 (-)
plppr1 plppr1,LOC107653496,LOC107750956,LOC107702599,LOC107710008,LOC106568589 coding downstream 462381 21974507 ~ 22038937 (-)
LOC111194991 NA coding downstream 578303 21922330 ~ 21923015 (-)
epha5 epha5,LOC108428864,LOC107702602 coding downstream 835592 21545217 ~ 21665726 (-)
trnam-cau_23 NA coding upstream 20825 22530608 ~ 22530679 (-)
trnam-cau_24 NA coding upstream 21041 22530824 ~ 22530895 (-)
trnam-cau_25 NA coding upstream 21257 22531040 ~ 22531111 (-)
trnar-ccu_29 NA coding upstream 21335 22531118 ~ 22531190 (-)
trnam-cau_26 NA coding upstream 21503 22531286 ~ 22531357 (-)
G178417 hnrnpd,LOC108440733,LOC108276832,LOC107702593 non-coding downstream 2071 22493456 ~ 22499247 (-)
G178416 hnrnpdl,LOC107715891,LOC107702595,LOC107653490 non-coding downstream 9813 22486845 ~ 22491505 (-)
G178427 NA non-coding downstream 39044 22460655 ~ 22462274 (-)
G178409 sec31a non-coding downstream 47699 22445592 ~ 22453619 (-)
G178423 sec31a non-coding downstream 59924 22439163 ~ 22441394 (-)
G178436 NA non-coding upstream 1266 22511049 ~ 22547980 (-)
G178440 NA non-coding upstream 5878 22515661 ~ 22523609 (-)
G178441 NA non-coding upstream 9681 22519464 ~ 22526911 (-)
G178452 NA non-coding upstream 239730 22749513 ~ 22750079 (-)
G178505 NA non-coding upstream 360375 22870158 ~ 22880309 (-)
G178426 NA other downstream 44539 22455497 ~ 22456779 (-)
G178267 grin3a,LOC107710005,LOC107750958 other downstream 567487 21933519 ~ 21933831 (-)
G178173 NA other downstream 1205485 21291522 ~ 21295833 (-)
LOC111194984 sh2d4a other downstream 2762005 19738649 ~ 19739313 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 3373195 19119786 ~ 19128123 (-)
G178450 NA other upstream 162349 22672132 ~ 22672683 (-)
LOC111195067 NA other upstream 425707 22935490 ~ 22941664 (-)
sh2d4a sh2d4a other upstream 435378 22945161 ~ 22957226 (-)
G178982 hint1,LOC107665476 other upstream 2621199 25130982 ~ 25134156 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other upstream 2693542 25203325 ~ 25207386 (-)

Expression

LOC103023660(LOC103023660,LOC108440734,LOC108276836,LOC106926931) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
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LOC103023660(LOC103023660,LOC108440734,LOC108276836,LOC106926931) Expression in each Bioproject

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LOC103023660(LOC103023660,LOC108440734,LOC108276836,LOC106926931) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network