G178440


Basic Information

Item Value
gene id G178440
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22515661 ~ 22523609 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241750
TTTTTGATTCGGACACAGAGACCTTCATCACAACACTACCTCATGAGTAGGACAATGAATGAGTTTACATGCACAAAAAATCAGTTCATTGACAGAATACCGCATTTATCTTATTATTCAAGTAGTCATGTAAACAGTATACTTTGATTTCTCAGATCGAATTAAGGTGTAAAAATCTAATCACGAAATCTAATAGAGAGAGCTGGATTTGTATTTGAATTGTATTTCCAAGTGCATGTAAACTATAAATCAGAGTATTCTTGGGCATACACAAAAACAGACCATGCCACCACAACCAAACTTGTAACGCAGAAATTAATTTTGGGAGGTTAATCCACGCCCTTTACCACTCCCACTCAAACCTATATAAaccctcacttcctctctacctgcatCTCAAACTActtcgcacccacctcctcctcatcttcctcctTTTTTCCTGTATCTCTTCTCATggggggcttcagcttcacgctTCCCAGCAAAGCTGCCCTGAACTCCTGCCTAAAACCTCTGAGTTCGCCACACTCTTTCTATTCCAATTCAAGGGCATGGAAAATACTAGCAACAGGATTTAAATAATCTGTATGATCATATTAAGCATGATGTTTAGGTTTTACCTAATATTTACGTCACATCTTAGTCTGTGAGattattggctggttgcaaaATCTGATTATTGCCTCACTAACTCATGTAAACTCTAAGTTTTCCAATTATCTGATTAATGTTATCTGATTAAGTTAATGTGAATATGTTGACTGGATTACTGACTTCAATATTCTGCAGTAAAcagattatgaagtgcatgCAAAAGCATCCAGAATGGGCAGAAAGGCATCAAGTCAGCTACCAGTTTCAGACACAGCTAAAGTATTCCCAAATTTCTCTCTAAACGACTGCAGTCATCACTAAAATCTCACATCTGTCTAAGTACATCAAATGTTATGCTTCTCTATGCTTCTCTGAATGTTGAAGGTCTTGTTTGATGAACCACTAAAACACCAGTTTCTTTGGCTTTTCCCAGGGAAATTCCTCTCTTCCAAAATGTCCATAGCTGGCAGTTTTCTGATAGATGGGCCTTTTTAGACCAAGCTCTCTGCGAAAAAAGATTCCACTGAGAttatatatatgctttattaaat
>TU241751
TTTTTGATTCGGACACAGAGACCTTCATCACAACACTACCTCATGAGTAGGACAATGAATGAGTTTACATGCACAAAAAATCAGTTCATTGACAGAATACCGCATTTATCTTATTATTCAAGTAGTCATGTAAACAGTATACTTTGATTTCTCAGATCGAATTAAGGTGTAAAAATCTAATTACGAAATCTAATAGAGAGAGCTGGATTTGTATTTGAATTGTATTTCCAAGTGCATGTAAACTATAAATCAGAGTATTCTTGGGCATACACAAAACAGACCATGCCACCACAACAAACTGTAACGCAGAAATTAATTTTGGGAGGTTAATCCACGCCCTTTACCACTCCCACTCAAACCTATATAAaccctcacttcctctctacctgcatCTCAAACTActtcgcacccacctcctcctcatcttcctcctTTTTTCCTGTATCTCTTCTCATggggggcttcagcttcacgctTCCCAGCAAAGCTGCCCTGAACTCCTGCCTAAAACCTCTGAGTTCGCCACACTCTTTCTATTCCAATTCAAGGGCATGGAAAATACTAGCAACAGGATTTAAATAATCTGTATGATCATATTAAGCATGATGTTTAGGTTTTACCTAATATTTACGTCACATCTTAGTCTGTGAGattattggctggttgcaaaATCTGATTATTGCCTCACTAACTCATGTAAACTCTAAGTTTTCCAATTATCTGATTAATGTTATCTGATTAAGTTAATGTGAATATGTTGACTGGATTACTGACTTCAATATTCTGCAGTAAAcagattatgaagtgcatgCAAAAGCATCCAGAATGGGCAGAAAGGCATCAAGTCAGCTACCAGTTTCAGACACAGCTAAAGTATTCCCAAATTTCTCTCTAAACGACTGCAGTCATCACTAAAATCTCACATCTGTCTAAGTACATCAAATGTTATGCTTCTCTATGCTTCTCTGAATGTTGAAGGTCTTGTTTGATGAACCACTAAAACACCAGTTTCTTTGGCTTTTCCCAGGGAAATTCCTCTCTTCCAAAATGTCCATAGCTGGCAGTTTTCTGATAGATGGGCCTTTTTAGACCAAGCTCTCTGCGAAAAAAGATTCCACTGAGAttatatatatgctttattaaat
>TU241752
TTTTTGATTCGGACACAGAGACCTTCATCACAACACTACCTCATGAGTAGGACAATGAATGAGTTTACATGCACAAAAAATCAGTTCATTGACAGAATACCGCATTTATCTTATTATTCAAGTAGTCATGTAAACAGTATACTTTGATTTCTCAGATCGAATTAAGGTGTAAAAATCTAATCACGAAATCTAATAGAGAGAGCTGGATTTGTATTTGAATTGTATTTCCAAGTGCATGTAAACTATAAATCAGAGTATTCTTGGGCATACACAAAAACAGACCATGCCACCACAACCAAACTTGTAACGCAGAAATTAATTTTGGGAGGTTAATCCACGCCCTTTACCACTCCCACTCAGACCTATATAAaccctcacttctCTCAAACTActtcgcacccacctcctcctcatcttcctcctTTTTTCCTGTATCTCTTCTCATggggggcttcagcttcacgctTCCCAGCAAAGCTGCCCTGAACTCCTGCCTAAAACCTCTGAGTTCGCCACACTCTTTCTATTCCAATTCAAGGGCATGGAAAATACTAGCAACAGGATTTAAATAATCTGTATGATCATATTAAGCATGATGTTTAGGTTTTACCTAATATTTACGTCACATCTTAGTCTGTGAGattattggctggttgcaaaATCTGATTATTGCCTCACTAACTCATGTAAACTCTAAGTTTTCCAATTATCTGATTAATGTTATCTGATTAAGTTAATGTGAATATGTTGACTGGATTACTGACTTCAATATTCTGCAGTAAAcagattatgaagtgcatgCAAAAGCATCCAGAATGGGCAGAAAGGCATCAAGTCAGCTACCAGTTTCAGACACAGCTAAAGTATTCCCAAATTTCTCTCTAAACGACTGCAGTCATCACTAAAATCTCACATCTGTCTAAGTACATCAAATGTTATGCTTCTCTATGCTTCTCTGAATGTTGAAGGTCTTGTTTGATGAACCACTAAAACACCAGTTTCTTTGGCTTTTCCCAGGGAAATTCCTCTCTTCCAAAATGTCCATAGCTGGCAGTTTTCTGATAGATGGGCCTTTTTAGACCAAGCTCTCTGCGAAAAAAGATTCCACTGAGAttatatatatgctttattaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241750 True 1148 lncRNA 0.38 2 22515661 22523609
TU241751 False 1145 lncRNA 0.38 2 22515661 22523609
TU241752 False 1135 lncRNA 0.38 2 22515661 22523609

Neighbor

gene id symbol gene type direction distance location
enoph1 enoph1,LOC107702573,LOC107715850,LOC102782295 coding downstream 30892 22478713 ~ 22484769 (-)
snx30 snx30,LOC107569385 coding downstream 138729 22343456 ~ 22376932 (-)
plppr1 plppr1,LOC107653496,LOC107750956,LOC107702599,LOC107710008,LOC106568589 coding downstream 476724 21974507 ~ 22038937 (-)
LOC111194991 NA coding downstream 592646 21922330 ~ 21923015 (-)
epha5 epha5,LOC108428864,LOC107702602 coding downstream 849935 21545217 ~ 21665726 (-)
trnam-cau_23 NA coding upstream 6999 22530608 ~ 22530679 (-)
trnam-cau_24 NA coding upstream 7215 22530824 ~ 22530895 (-)
trnam-cau_25 NA coding upstream 7431 22531040 ~ 22531111 (-)
trnar-ccu_29 NA coding upstream 7509 22531118 ~ 22531190 (-)
trnam-cau_26 NA coding upstream 7677 22531286 ~ 22531357 (-)
G178417 hnrnpd,LOC108440733,LOC108276832,LOC107702593 non-coding downstream 16414 22493456 ~ 22499247 (-)
G178416 hnrnpdl,LOC107715891,LOC107702595,LOC107653490 non-coding downstream 24156 22486845 ~ 22491505 (-)
G178427 NA non-coding downstream 53387 22460655 ~ 22462274 (-)
G178409 sec31a non-coding downstream 62042 22445592 ~ 22453619 (-)
G178423 sec31a non-coding downstream 74267 22439163 ~ 22441394 (-)
G178452 NA non-coding upstream 225904 22749513 ~ 22750079 (-)
G178505 NA non-coding upstream 346549 22870158 ~ 22880309 (-)
G178521 NA non-coding upstream 385183 22908792 ~ 22913269 (-)
G178528 NA non-coding upstream 406500 22930109 ~ 22930968 (-)
G178550 NA non-coding upstream 595099 23118708 ~ 23188801 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other downstream 5878 22501318 ~ 22509783 (-)
G178426 NA other downstream 58882 22455497 ~ 22456779 (-)
G178267 grin3a,LOC107710005,LOC107750958 other downstream 581830 21933519 ~ 21933831 (-)
G178173 NA other downstream 1219828 21291522 ~ 21295833 (-)
LOC111194984 sh2d4a other downstream 2776348 19738649 ~ 19739313 (-)
G178450 NA other upstream 148523 22672132 ~ 22672683 (-)
LOC111195067 NA other upstream 411881 22935490 ~ 22941664 (-)
sh2d4a sh2d4a other upstream 421552 22945161 ~ 22957226 (-)
G178982 hint1,LOC107665476 other upstream 2607373 25130982 ~ 25134156 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other upstream 2679716 25203325 ~ 25207386 (-)

Expression


Co-expression Network