G178441


Basic Information

Item Value
gene id G178441
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22519464 ~ 22526911 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241753
CTCCTCCCTCTGAGCCTCCTGGACCGTCTTCCTCATTGCCTGTAATCTCTCCTGATCTTTCCTCTCGCTCTGATGCTTATGCTCCACAATTTTTAAAGCAACTTGTTTCCAGTACTTGACAAGCCCTAGAAGCTCTTGTTTCTGGTTCTCCATTTCTCCCTGTCTTTCTCCCacattctcctctctctgttcctCATCATCTGTCTCCTCTTCACTCACAGACTCTCTGTCTTCACTTCCCTCAGACtcgctctctcctctctcctctctctgttcaTCATCCTCCCTCACCGGCAGGACATGCTGGTCCCTCGGGTCCTGGAGTCTCTCCCGAATGTCTGCCATTATGTCGTCTACGCTTCTCAGCTGGTCACCGAAATCCATTGCggttctctgtctctctctccgtcaGTGCAGAAGTGAAATGAGGCAGGTATATATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241753 True 442 lncRNA 0.50 2 22519464 22526911

Neighbor

gene id symbol gene type direction distance location
enoph1 enoph1,LOC107702573,LOC107715850,LOC102782295 coding downstream 34695 22478713 ~ 22484769 (-)
snx30 snx30,LOC107569385 coding downstream 142532 22343456 ~ 22376932 (-)
plppr1 plppr1,LOC107653496,LOC107750956,LOC107702599,LOC107710008,LOC106568589 coding downstream 480527 21974507 ~ 22038937 (-)
LOC111194991 NA coding downstream 596449 21922330 ~ 21923015 (-)
epha5 epha5,LOC108428864,LOC107702602 coding downstream 853738 21545217 ~ 21665726 (-)
trnam-cau_23 NA coding upstream 3697 22530608 ~ 22530679 (-)
trnam-cau_24 NA coding upstream 3913 22530824 ~ 22530895 (-)
trnam-cau_25 NA coding upstream 4129 22531040 ~ 22531111 (-)
trnar-ccu_29 NA coding upstream 4207 22531118 ~ 22531190 (-)
trnam-cau_26 NA coding upstream 4375 22531286 ~ 22531357 (-)
G178417 hnrnpd,LOC108440733,LOC108276832,LOC107702593 non-coding downstream 20217 22493456 ~ 22499247 (-)
G178416 hnrnpdl,LOC107715891,LOC107702595,LOC107653490 non-coding downstream 27959 22486845 ~ 22491505 (-)
G178427 NA non-coding downstream 57190 22460655 ~ 22462274 (-)
G178409 sec31a non-coding downstream 65845 22445592 ~ 22453619 (-)
G178423 sec31a non-coding downstream 78070 22439163 ~ 22441394 (-)
G178452 NA non-coding upstream 222602 22749513 ~ 22750079 (-)
G178505 NA non-coding upstream 343247 22870158 ~ 22880309 (-)
G178521 NA non-coding upstream 381881 22908792 ~ 22913269 (-)
G178528 NA non-coding upstream 403198 22930109 ~ 22930968 (-)
G178550 NA non-coding upstream 591797 23118708 ~ 23188801 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other downstream 9681 22501318 ~ 22509783 (-)
G178426 NA other downstream 62685 22455497 ~ 22456779 (-)
G178267 grin3a,LOC107710005,LOC107750958 other downstream 585633 21933519 ~ 21933831 (-)
G178173 NA other downstream 1223631 21291522 ~ 21295833 (-)
LOC111194984 sh2d4a other downstream 2780151 19738649 ~ 19739313 (-)
G178450 NA other upstream 145221 22672132 ~ 22672683 (-)
LOC111195067 NA other upstream 408579 22935490 ~ 22941664 (-)
sh2d4a sh2d4a other upstream 418250 22945161 ~ 22957226 (-)
G178982 hint1,LOC107665476 other upstream 2604071 25130982 ~ 25134156 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other upstream 2676414 25203325 ~ 25207386 (-)

Expression


Co-expression Network