G178482 (sh2d4a)


Basic Information

Item Value
gene id G178482
gene name sh2d4a
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22950963 ~ 22957159 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241817
ATGAGTCCTGCCAGGCTTTCTCCTCCTTGTCTTGCCCTTTCTTCTGGTGATTAACCTGCTTCAGGTCCAGATAGATCTGCTGGGCTCTCTCCTCCTCCAGCCTCTTTAGCTCCTCTTCAGctttcctcctctcctccgcctCTCGCTTCTTGAGCTCCTCCTGTCTGCTCTGCTCCAGGGCAGCTGCCTTCCGGGCCTCCTCTTTTCTGGCTGCCTCCTCTTGCTCCAGATACAAACCAGAGAACCGCTTCTCCAGTTCAGCCTCTTTTTTAGCTctgagTTCGTCTGCTTCTTTCTGCGCCTGCAGAGCTGCTCTCTCCGCCATGATCTCATCACAGATCTGGTCGTAGGTCTTATCATCAGGGTGTTCTCCCATAACCCAAACCCAAACATCGTTGTCTGAACTCTTCATCCATGACACTGTCTTCTTTGATActttttttgttttcccttTTCCAGCCTCCTGCTTCTCCAGTtttgcttctctctctttccacctCCGGACCTGCTCTTCCCTCATCTTAAAGAACAGAACCTGCTTCTGCTCCTCGCTCAGCTCTGCCAGCAGATCTGGCTCAATGTACATGTCGTTCAGAATCTGCTGCAACATGTTTGCAGTCCTGTAACTCAGTCCTCAGTCGAGAATTGTGAAAGGGCCCAGTTTGGAACCACAGAAGAAGCAGCTCAACTCCTCCTCAATGAGTCTTTTCCATTACTCCGTCCATTACAATCCAATACTGCCTCCAGGCTACTTCCTCATTCCAGAGGCTGAAAGAGAGGTCTGGATAAAGGAATGCAGGGCAGAAACGTACACAAAATGCTCACAAGTGTCTGCATGGAAATGTACCTTTGCCAGTAAAGCACGTCAAAGCTAATTATGCACTCCTGTACCTATCTAATAGGCACACCTATTTCCTAGGGATTAATCTTGCTTAACAAGAAATGAACCAAGAAACAAGACTGAATGAGGTTTGAGAAGCAGATGCTAATCTATTGTCTCtgcctctgtct

Function

symbol description
sh2d4a Predicted to be active in cytoplasm. Orthologous to human SH2D4A (SH2 domain containing 4A).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241817 True 1011 lncRNA 0.48 5 22950963 22957159

Neighbor

gene id symbol gene type direction distance location
slc38a9 slc38a9,LOC107670042,LOC107564110,LOC107740785,LOC107566906,LOC107715861 coding upstream 22719 22908793 ~ 22928244 (+)
il6st NA coding upstream 70649 22865141 ~ 22880314 (+)
ankrd55 ankrd55,LOC107670032,LOC107737049,LOC107702571 coding upstream 87580 22839508 ~ 22863383 (+)
LOC111195066 NA coding upstream 422880 22519419 ~ 22528083 (+)
LOC103022635 mat2al,LOC108440739,LOC108276530,LOC107732036,LOC107653488,LOC107573852,LOC102202437 coding upstream 435378 22509888 ~ 22515585 (+)
LOC111194992 NA coding downstream 7834 22964993 ~ 22966528 (+)
LOC111194985 NA coding downstream 13263 22970422 ~ 22973005 (+)
LOC103038592 LOC106571427,LOC108427269,LOC108276947 coding downstream 37930 22995089 ~ 23187224 (+)
fut10 fut10 coding downstream 246317 23203476 ~ 23217258 (+)
purg NA coding downstream 502209 23459368 ~ 23461975 (+)
G178477 NA non-coding upstream 7614 22943126 ~ 22943349 (+)
G178474 NA non-coding upstream 9342 22935483 ~ 22941621 (+)
G178476 NA non-coding upstream 9814 22940604 ~ 22941149 (+)
G178472 NA non-coding upstream 20018 22930223 ~ 22930945 (+)
G178394 map3k1 non-coding upstream 230157 22713737 ~ 22720806 (+)
G178578 NA non-coding downstream 303412 23260571 ~ 23263280 (+)
LOC111195072 NA non-coding downstream 317290 23274449 ~ 23348016 (+)
G178614 NA non-coding downstream 439864 23397023 ~ 23397235 (+)
G178616 NA non-coding downstream 445811 23402970 ~ 23403734 (+)
G178617 NA non-coding downstream 453946 23411105 ~ 23418343 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 241406 22689001 ~ 22709557 (+)
G178352 NA other upstream 404833 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 448804 22493440 ~ 22502159 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other upstream 459460 22486823 ~ 22491503 (+)
LOC103025565 scd5 other upstream 485234 22456319 ~ 22465729 (+)
G178485 NA other downstream 6288 22963447 ~ 22964989 (+)
LOC103032894 LOC108424565 other downstream 1490633 24447792 ~ 24454622 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 2287002 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 3873478 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 3956591 26913750 ~ 26916344 (+)

Expression


Co-expression Network