G178485


Basic Information

Item Value
gene id G178485
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22963447 ~ 22964989 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241823
CACTATAGCAACAGAAAACTCAAAAACCCACAACCTCTCTCTTGCTCGCACGCGCTCAAAAACTGCTATAAAAAACTCtaaatctctttctttctaactACTACTGTTTCTTCAGCTTTCTCCTCCAACTTTTTCTACAGGTTCTTTTTTGCCCCCACAGGTTACAGGCTTTCAATTTCATCAGGAAGACATCAGGAAAACACCAGGAACTCTTCCTTACCATCGGAGCCGCTTCCCGGGTTCATCAACAACATCTGTCCGTATTATGGACGGCGTCTGCGCCAGGACAGTCCCTAGACTGGCAGAccaggaggagaggaggagaggaaagaaGCGGTCCACCAGCCTGCTCTCACCCATGTCTCCTCCGGCCAAGAGGGCGAAGACCATCCGTGTTACGGACGGCGCCTGCGCAAGGACAGTCCCTAGACCGTCAGAccaggaggagaggagaagaggcAAGAAGAAGTCCACCAGCTTGCTCTCAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241823 True 488 TUCP 0.51 2 22963447 22964989

Neighbor

gene id symbol gene type direction distance location
slc38a9 slc38a9,LOC107670042,LOC107564110,LOC107740785,LOC107566906,LOC107715861 coding upstream 35203 22908793 ~ 22928244 (+)
il6st NA coding upstream 83133 22865141 ~ 22880314 (+)
ankrd55 ankrd55,LOC107670032,LOC107737049,LOC107702571 coding upstream 100064 22839508 ~ 22863383 (+)
LOC111195066 NA coding upstream 435364 22519419 ~ 22528083 (+)
LOC103022635 mat2al,LOC108440739,LOC108276530,LOC107732036,LOC107653488,LOC107573852,LOC102202437 coding upstream 447862 22509888 ~ 22515585 (+)
LOC111194992 NA coding downstream 4 22964993 ~ 22966528 (+)
LOC111194985 NA coding downstream 5433 22970422 ~ 22973005 (+)
LOC103038592 LOC106571427,LOC108427269,LOC108276947 coding downstream 30100 22995089 ~ 23187224 (+)
fut10 fut10 coding downstream 238487 23203476 ~ 23217258 (+)
purg NA coding downstream 494379 23459368 ~ 23461975 (+)
G178482 sh2d4a non-coding upstream 6288 22950963 ~ 22957159 (+)
G178477 NA non-coding upstream 20098 22943126 ~ 22943349 (+)
G178474 NA non-coding upstream 21826 22935483 ~ 22941621 (+)
G178476 NA non-coding upstream 22298 22940604 ~ 22941149 (+)
G178472 NA non-coding upstream 32502 22930223 ~ 22930945 (+)
G178578 NA non-coding downstream 295582 23260571 ~ 23263280 (+)
LOC111195072 NA non-coding downstream 309460 23274449 ~ 23348016 (+)
G178614 NA non-coding downstream 432034 23397023 ~ 23397235 (+)
G178616 NA non-coding downstream 437981 23402970 ~ 23403734 (+)
G178617 NA non-coding downstream 446116 23411105 ~ 23418343 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 253890 22689001 ~ 22709557 (+)
G178352 NA other upstream 417317 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 461288 22493440 ~ 22502159 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other upstream 471944 22486823 ~ 22491503 (+)
LOC103025565 scd5 other upstream 497718 22456319 ~ 22465729 (+)
LOC103032894 LOC108424565 other downstream 1482803 24447792 ~ 24454622 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 2279172 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 3865648 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 3948761 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 4559313 27524302 ~ 27525441 (+)

Expression


Co-expression Network