G178521


Basic Information

Item Value
gene id G178521
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22908792 ~ 22913269 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241872
TCGGCCATAGTAATGCACCCTGCTGTTCAATGCTGAAGCCTCAGATGACACTCGTTCCTGGGCAGAATCCTCCACTATGTTCTTGGGCTCCACATGAAAAGGCCTTCTTTGTCTGGGGTCCAGTGAGTCTACTGGGTCTGAGTAGTACTCTCCTGCTTGAATAGAGGCAAACAGAGGTTTCCAGTCCTCATCCATGTTCTTTCAGTACGTCACCTAAAAATCATTCATTACCTCCtaggagaaacagaagaaacacCTCGTCTCGCCAGGCTAACTTGTTTTGAAAAGGAACCACAGCGTGATCACACACACCGGTTACAGTTCTTGCTGGACCTGTAGTGAACGCTACGCCCAGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241872 True 358 lncRNA 0.49 3 22908792 22913269

Neighbor

gene id symbol gene type direction distance location
ddx4 ddx4,LOC107740783,LOC107670045,LOC107715859,LOC107665473 coding downstream 1418 22899476 ~ 22907374 (-)
LOC103040684 NA coding downstream 11247 22881124 ~ 22897545 (-)
map3k1 map3k1,LOC107558252,LOC107670047 coding downstream 144380 22696309 ~ 22764412 (-)
LOC103042817 hmgcs1,LOC108427280,LOC108277226,LOC107737058 coding downstream 214860 22679197 ~ 22693932 (-)
LOC103043437 tln1 coding downstream 236941 22581421 ~ 22671851 (-)
nrg1 nrg1 coding upstream 343256 23256525 ~ 23403475 (-)
wrn NA coding upstream 497914 23411183 ~ 23453696 (-)
ubxn8 NA coding upstream 601983 23515252 ~ 23521636 (-)
LOC103038694 LOC108427265,LOC108277159 coding upstream 793432 23706701 ~ 24078366 (-)
apbb1 apbb1 coding upstream 1303903 24217172 ~ 24231664 (-)
G178505 NA non-coding downstream 28483 22870158 ~ 22880309 (-)
G178452 NA non-coding downstream 158713 22749513 ~ 22750079 (-)
G178436 NA non-coding downstream 360812 22511049 ~ 22547980 (-)
G178441 NA non-coding downstream 381881 22519464 ~ 22526911 (-)
G178440 NA non-coding downstream 385183 22515661 ~ 22523609 (-)
G178528 NA non-coding upstream 16840 22930109 ~ 22930968 (-)
G178550 NA non-coding upstream 205439 23118708 ~ 23188801 (-)
LOC111195071 NA non-coding upstream 308285 23221554 ~ 23222498 (-)
G178575 NA non-coding upstream 341969 23255238 ~ 23255493 (-)
G178660 NA non-coding upstream 497345 23410614 ~ 23410877 (-)
G178450 NA other downstream 236109 22672132 ~ 22672683 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other downstream 399009 22501318 ~ 22509783 (-)
G178426 NA other downstream 452013 22455497 ~ 22456779 (-)
G178267 grin3a,LOC107710005,LOC107750958 other downstream 974961 21933519 ~ 21933831 (-)
G178173 NA other downstream 1612959 21291522 ~ 21295833 (-)
LOC111195067 NA other upstream 22221 22935490 ~ 22941664 (-)
sh2d4a sh2d4a other upstream 31892 22945161 ~ 22957226 (-)
G178982 hint1,LOC107665476 other upstream 2217713 25130982 ~ 25134156 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other upstream 2290056 25203325 ~ 25207386 (-)
thsd1 thsd1 other upstream 2380406 25293675 ~ 25303083 (-)

Expression


Co-expression Network