G178528


Basic Information

Item Value
gene id G178528
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22930109 ~ 22930968 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241883
tgaatatttatttaaagtacatACAAAATCATAATACACCGCTAGAGAAATATCTATATACaacttttaaaacaattaaagctTTGGAATTTACATGTGCAAAATTAAGCCCTGCATACAGAAATATACTGATAACTTtctgatgctttaaaaaataagaatcaaaGGAATCAAAGTCCAAAAgataagcattagcatttcagAAGTACTGTCCGAGGTCAGCATACACactagaaaaacagagagaaaaaaaaatcacagttcttACAGTCTGCTTGTCTTACCAGGTTCCATGAGACACTGCAGTATCCCTTTATTCATCCAATAACATAAAtcatacattaataaaacacctgttttattagaaatacttgTTCAAATTACAAATTAGCACCCACAACTCCACAGAGGTTGGAGGACcataatttaatacaattatatatttaagttacaTCATTTTGAgcatattacattattttgccTTTCAAAAAATGCCAAGTGAGCAAATCAAAtctaaaacttttttatgttcCCCCTCTGCATGTGATACATAGAGATCAGTAACATCTTTCAGTAAAAATGGTCTGTAAAAACAATACGAAatttgaaaaggaaaaaaatacaagctACAAAAAATTTAACTTTCAAAATAAATTCATGGTGATCACTTGATTATGACAGAAATGGACACCTGCTAAAACcacatacagtgccctccataattattggcacccctggttaagatgtgttctttagcttctcataaattgagttttgttcaaaataatataggaccacgatggaaaaaaagagtaaaatacaacctttaactcaaatgaatttattcagtaggaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241883 True 860 lncRNA 0.30 1 22930109 22930968

Neighbor

gene id symbol gene type direction distance location
ddx4 ddx4,LOC107740783,LOC107670045,LOC107715859,LOC107665473 coding downstream 22735 22899476 ~ 22907374 (-)
LOC103040684 NA coding downstream 32564 22881124 ~ 22897545 (-)
map3k1 map3k1,LOC107558252,LOC107670047 coding downstream 165697 22696309 ~ 22764412 (-)
LOC103042817 hmgcs1,LOC108427280,LOC108277226,LOC107737058 coding downstream 236177 22679197 ~ 22693932 (-)
LOC103043437 tln1 coding downstream 258258 22581421 ~ 22671851 (-)
nrg1 nrg1 coding upstream 325557 23256525 ~ 23403475 (-)
wrn NA coding upstream 480215 23411183 ~ 23453696 (-)
ubxn8 NA coding upstream 584284 23515252 ~ 23521636 (-)
LOC103038694 LOC108427265,LOC108277159 coding upstream 775733 23706701 ~ 24078366 (-)
apbb1 apbb1 coding upstream 1286204 24217172 ~ 24231664 (-)
G178521 NA non-coding downstream 16840 22908792 ~ 22913269 (-)
G178505 NA non-coding downstream 49800 22870158 ~ 22880309 (-)
G178452 NA non-coding downstream 180030 22749513 ~ 22750079 (-)
G178436 NA non-coding downstream 382129 22511049 ~ 22547980 (-)
G178550 NA non-coding upstream 187740 23118708 ~ 23188801 (-)
LOC111195071 NA non-coding upstream 290586 23221554 ~ 23222498 (-)
G178575 NA non-coding upstream 324270 23255238 ~ 23255493 (-)
G178660 NA non-coding upstream 479646 23410614 ~ 23410877 (-)
G178672 NA non-coding upstream 536890 23467858 ~ 23475206 (-)
G178450 NA other downstream 257426 22672132 ~ 22672683 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other downstream 420326 22501318 ~ 22509783 (-)
G178426 NA other downstream 473330 22455497 ~ 22456779 (-)
G178267 grin3a,LOC107710005,LOC107750958 other downstream 996278 21933519 ~ 21933831 (-)
G178173 NA other downstream 1634276 21291522 ~ 21295833 (-)
LOC111195067 NA other upstream 4522 22935490 ~ 22941664 (-)
sh2d4a sh2d4a other upstream 14193 22945161 ~ 22957226 (-)
G178982 hint1,LOC107665476 other upstream 2200014 25130982 ~ 25134156 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other upstream 2272357 25203325 ~ 25207386 (-)
thsd1 thsd1 other upstream 2362707 25293675 ~ 25303083 (-)

Expression


Co-expression Network