LOC111195072


Basic Information

Item Value
gene id LOC111195072
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 23274449 ~ 23348016 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU241957
CTTTGAGGACAGTCACTTTAGCTTCATATGAATCTTGACCTTGATCATTGATAGCCTTGCACATGTATGTACCAACATCAGACTCTGTAGCTTTCATTAAGGTAAGCTCTGACATTATCCGTCCGTTTTTTCTTCATCTTAATCTGTCTGGTTGGATTACTGCCTATCTTGATTCCATTATGGTACCACTCCAGCTTGGTCTGTTTACCACCTGCTGTCAGCTCACACTTCAGCGAGATCTTCTGCCCTTCTGGAACATCCACACTGCGTAGTTTCTTTAACTTGGGTGCGACTGGGATTTCTTCCTTCTCAGCTTTCTGTCCACTTTTCCCGTTTTTCCCACTCTTCCCATTCTTCTTCCCGCTCTTTTCAGACAtgctgctcctctgtgtctctctgtttgtcAGGTTTAGCTGGGCTCTGAGTCTCTGGGGGTCTCTGAGAGTCGTTCCTCACGGTTGGAGAAGCTCTGCTACACCTTCCTCCTCCAGCGCGGTGCTCTCCGGCAGC
>TU241958
CTTTGAGGACAGTCACTTTAGCTTCATATGAATCTTGACCTTGATCATTGATAGCCTTGCACATGTATGTACCAACATCAGACTCTGTAGCTTTCATTAAGGTAAGCTCTGACATTATCCGTCCGTTTTTTCTTCATCTTAATCTGTCTGGTTGGATTACTGCCTATCTTGATTCCATTATGGTACCACTCCAGCTTGGTCTGTTTACCACCTGCTGTCAGCTCACACTTCAGCGAGATCTTCTGCCCTTCTGGAACATCCACACTGCGTAGTTTCTTTAACTTGGGTGCGACTGAAAA
>XR_002651468.1
GCTAATGGATCCACGCATCTGCGGATTACTGATGAAGCAGAATGTGTGAAAGGCTGAAGAGCACACATTCCACCTCCACGTAGATGCTTGCTGAGCTGCTGGAGTAAGGCTGAGTATGAGCAGGGACTTTTTTGCTGATGCAGCTGCGTTCAGCTGGAGTTGATTGAACCGAGAGTCGAGACTTTCTTGCCGTGGGCCAAAAGCAGGCTGGCCGAGAGCTTTAGAGAAGAATGAAGATTCTAAATCTTACAGTTAAAAGGACAAGCCACCACGGCGTCTGCAGAGAGACGGATGAGACGTGGCATATCATTAGGTTTAGCTGGGCTCTGAGTCTCTGGGGGTCTCTGAGAGTCGTTCCTCACGGTTGGAGAAGCTCTGCTACACCTTCCTCCTCCAGCGCGGTGCTCTCCGGCAGCGCGGCTCCCTCAGCGGGAGGGAGTTTTACAGCCCCGGAGAGAGAGGCGGGCTCTCTACAGCCCCGTGCACAACTTCAACCACCCCTGATCAAATTACAGATGATTttctaactgaaaaaaaaaaagttttaattggacaaactgtagtaaaaaaaaaaaaaagcttgtgtTCATTGTTACTTTTCTCAATAAGTTGTATGCATTCTTTCACATTAAATAAGCAGGCACCTTG
>XR_002651469.1
GCTAATGGATCCACGCATCTGCGGATTACTGATGAAGCAGAATGTGTGAAAGGCTGAAGAGCACACATTCCACCTCCACGTAGATGCTTGCTGAGCTGCTGGAGTAAGGCTGAGTATGAGCAGGGACTTTTTTGCTGATGCAGCTGCGTTCAGCTGGAGTTGATTGAACCGAGAGTCGAGACTTTCTTGCCGTGGGCCAAAAGCAGGCTGGCCGAGAGCTTTAGAGAAGAATGAAGATTCTAAATCTTACAGTTAAAAGGACAAGCCACCACGGCGTCTGCAGAGAGACGGATGAGACGTGGCATATCATTAGATCCCAGCCATTCCCATGATCCCATGAGAACGCCCGACGACTCCAGCCCCCATCAATACGCAGCCCGGCTCCATGGAGGGTCTGCAAAATTCTCAAGAAGGCAGCTCCTCCAGTTACAGGCAAACACAAAAAGAATAATCTGCCCCCCTTCACGACCCACATCGGTGCCATCAAACTGTCTAGTTAAATTCAAAGTCCTGCCTTTAATGGAGCACTTCAGGGGAAACTTTGTTGTGCGAGACGGAGCAAACAACGCCGGCCATCAACTGTTTCAACCTCTTACAGCAGAAGTAGTTTACGGAGCACCCATATGAGGGTAGTGGGAGGGTATTCTCCTCTAACAATCCAGGCTTCAAGGCTCCGGATTCCCCAAAGGCTCTTCTGCAAACTGAGAATCGACAATAGCAACTGACAAGTCATGAATATTGTGCATACGGACTCACACTGCCTTCATACCTCCCAGATACACAGCGAGAGACTGTCAGTTAACCAACAAGGTGATAGCCCACTGACAAACCGAGGAAAAGTTTAAATCCAAAATCAACGAGAAGCACACGTACTGGTGAGGGCAATCTGAGGCCAAATTAAATATGTATCAGATAGTAGACACTCAACCGAAAACTGCAGgagaagataaagagagagagagagtgtgagagagagtgagagagagactagTAAATGCTAAGAATCTCATTCAGATACTCATGAATATAAAGCTGGGACAGCTGTACTGATAAGGCCAGttccagatctttttttttttttttatatgatttcaGGCGGTCTAATCTGAAAGGTCTTTTAATAGTCATCCAGGTAAGAACATACCCTCTATATGGGTGCAtactaattttataaaataaaaactgtgatagAAACTCTTACTTTTGATATGACTTTAAACTTACTTTCAATAGACCAGTTTCTATACTCTTGAGAGAGTTTTGGCCACTTTTGGTGGCTTTTATACAGTTAATAATATGAATTATATCAATCAGAATTATTAATCAACAACTGAAATTAATCTGGCCCAAGCCATATGCTGCTAAACCATGATTCCAAGCAGATACAATATTTCCTTGCTTGTAAGTACTCCCAGGACAAAAACAAGGGGCGTTctattcaataaaaatatgtaaaatatttgaaattttCTTTCTGATTCCTTCCcaaaatgttttaatctttGGACAATcccaaaaaatgtgtgtatggTCTCCAATTAGCCCACATTGTCTCCAGCACAAGCTTGTTTTGGCATTGTCATATTTAGAAAAGATATTCACTTTCCAGCAGAATTCCTTCCACATTAGACTGCTGGTTAATTTATGACTATTTTCACAGGCTGGCGCTGCAGTTTTAAGGTACAACTGAACATTACATATCCTGCAGTGTCAATACTGGACATGAGCTCAATGTAATGAAGAAGGTATAACAATATACCCTGCTGTCCGTTTTGAAGGAAGAGAGTAAATATTCCTTTCTAATGCGGCTGCTGATAATTGTAAAAACTGAAAGAGGAGAAAATGAATAAGAtgaatatgagagagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241957 False 510 lncRNA 0.48 3 23333745 23347784
TU241958 False 299 lncRNA 0.43 2 23333745 23335588
XR_002651468.1 False 648 lncRNA 0.48 4 23274449 23348016
XR_002651469.1 True 1868 lncRNA 0.42 4 23274449 23338775

Neighbor

gene id symbol gene type direction distance location
fut10 fut10 coding upstream 57191 23203476 ~ 23217258 (+)
LOC103038592 LOC106571427,LOC108427269,LOC108276947 coding upstream 87225 22995089 ~ 23187224 (+)
LOC111194985 NA coding upstream 301444 22970422 ~ 22973005 (+)
LOC111194992 NA coding upstream 307921 22964993 ~ 22966528 (+)
slc38a9 slc38a9,LOC107670042,LOC107564110,LOC107740785,LOC107566906,LOC107715861 coding upstream 346205 22908793 ~ 22928244 (+)
purg NA coding downstream 111352 23459368 ~ 23461975 (+)
LOC111188215 NA coding downstream 131521 23479537 ~ 23494300 (+)
LOC103034079 NA coding downstream 146138 23494154 ~ 23497618 (+)
ppp2cb ppp2cb,LOC107758729 coding downstream 155291 23503307 ~ 23514711 (+)
LOC103037096 LOC108410414,LOC108277158,LOC105901021,LOC106603263 coding downstream 193834 23541850 ~ 23690355 (+)
G178578 NA non-coding upstream 11169 23260571 ~ 23263280 (+)
G178482 sh2d4a non-coding upstream 317290 22950963 ~ 22957159 (+)
G178477 NA non-coding upstream 331100 22943126 ~ 22943349 (+)
G178474 NA non-coding upstream 332828 22935483 ~ 22941621 (+)
G178476 NA non-coding upstream 333300 22940604 ~ 22941149 (+)
G178614 NA non-coding downstream 49007 23397023 ~ 23397235 (+)
G178616 NA non-coding downstream 54954 23402970 ~ 23403734 (+)
G178617 NA non-coding downstream 63089 23411105 ~ 23418343 (+)
G178623 wrn non-coding downstream 77139 23425155 ~ 23426497 (+)
G178624 wrn,LOC107715857,LOC107573262 non-coding downstream 79369 23427385 ~ 23432711 (+)
G178485 NA other upstream 309460 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 564892 22689001 ~ 22709557 (+)
G178352 NA other upstream 728319 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 772290 22493440 ~ 22502159 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other upstream 782946 22486823 ~ 22491503 (+)
LOC103032894 LOC108424565 other downstream 1099776 24447792 ~ 24454622 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 1896145 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 3482621 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 3565734 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 4176286 27524302 ~ 27525441 (+)

Expression


Co-expression Network