G178634


Basic Information

Item Value
gene id G178634
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 23516311 ~ 23519214 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242010
tgtgaaaTCCAGGAATTCCTAAATTATCTTCTTTTAAGTCCATTCAGAAGACTCTATAAAATAGTATCAGGTTGTATCAGGGTTCATCAGGGTCCATTTCCCCCACATTAAGAGCGGTGTCCATAACAATCCCAGCATCCTCCATGCtgaggtctgtgtgtgtgatgagtggTCTTCTAGGGAAGGAGGTGTACAAGCCATATATTGTGGGAGGATATCCAGACTTGTGCAGCCAGTCCAAAAGCACagaagaactgcagcttctgaGGAACCTTCTCTGTACCGTCCTTCCACCTGGAACTCTCAGTGCAATTCTCACAACCCCCTCAGCATTTTCAGAGGGCTCATCAGGTAAAATTATGATCCTTTTCTCTTTAGGGCGTTCTTTTTGAACAGGAGTTAGATGTGGTTTCTCGAGCTGCTTTCGTCTCCTTGCTGCTCTCTGGCTGGGAGTCTCATCCCCCTCTTCTGCATCTGCTTCAGTACCTCCCTCCTGCGGCTATTGTTTTTGCTCGAGCGAGGCTTTTGCACTCGAGTTTAGAAAGGGGTGGTTTtaacagtttgggggcggggtcagggtcgcctccctcagcgaacgctattggctgaaatctccagggtttgtgacggaccgcctacATCCAAGAGCCGAAGGAGGAGGGCAGGAgatttagctagctggctatgctaacatccaaacagccTTTTTTCCGGCGCTGCTAGCCCAGGTTTAGTGCCAGGAGTGACCGGCTATCTCGTTCAGCACCGGTCGCTCCAGACGCTAAACGAGAGAGCAGATGTTCTATCATTTCGGTCGCTCCGGGCACTAAACACGGGTTACCAGCGCCGGAGAGCCAGTCGCTGAAAGAGACTGCCGGTCACTCCGGGCACTAATCTGGGCAGACAGTGCCGGAGGGCCGGTCGCTCCGGGCGCTGAATGAGAGAGCCGGTCTCCGGCGCTAACGGGTTGTTAGGACTGtagcatagccagctagctcTCCTGTCGTCCTTCTTTCTCCGGCTGTTGGAGGTAGACGGTCCGTCACAAACCCAGCGCGcacacaattcccttttttGCTCGCGAGCTTCACATTGGCGCtcacacacgcaaaatgttaaaacacgatGGTTAATTTTTTCcacctggtatttttgtgcccctgacttttgacattgatgtgacgccatacatATGACTCTAAATGTGTTGGATGAACATgtaggctgcgtccagaaaccccaaaagtgtctcctttttcctaccgatcctcctcctctcctccgtgacccggaaactgatttcgtgacgccatcttgccgcctgtccgaataccgtagaagacgaaagaagccgcttaaaatccacctAGTAAGCTTCCAACGGAGgttacatcagtg

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU242010 True 1398 lncRNA 0.51 5 23516311 23519214

Neighbor

gene id symbol gene type direction distance location
ppp2cb ppp2cb,LOC107758729 coding upstream 1600 23503307 ~ 23514711 (+)
LOC103034079 NA coding upstream 18693 23494154 ~ 23497618 (+)
LOC111188215 NA coding upstream 22011 23479537 ~ 23494300 (+)
purg NA coding upstream 54336 23459368 ~ 23461975 (+)
fut10 fut10 coding upstream 299053 23203476 ~ 23217258 (+)
LOC103037096 LOC108410414,LOC108277158,LOC105901021,LOC106603263 coding downstream 22636 23541850 ~ 23690355 (+)
LOC111195073 NA coding downstream 184773 23703987 ~ 23707849 (+)
gramd2b gramd3 coding downstream 952992 24472206 ~ 24482883 (+)
trnam-cau_40 NA coding downstream 982660 24501874 ~ 24501945 (+)
phax phax coding downstream 986423 24505637 ~ 24509580 (+)
G178635 NA non-coding upstream 410 23515575 ~ 23515901 (+)
G178632 NA non-coding upstream 15970 23499843 ~ 23500341 (+)
G178611 NA non-coding upstream 41106 23447089 ~ 23475205 (+)
G178624 wrn,LOC107715857,LOC107573262 non-coding upstream 83600 23427385 ~ 23432711 (+)
G178623 wrn non-coding upstream 89814 23425155 ~ 23426497 (+)
G178781 NA non-coding downstream 668772 24187986 ~ 24191257 (+)
G178805 NA non-coding downstream 772761 24291975 ~ 24293344 (+)
LOC111195075 NA non-coding downstream 778898 24298112 ~ 24301847 (+)
G178844 NA non-coding downstream 993374 24512588 ~ 24513208 (+)
G178853 NA non-coding downstream 1067293 24586507 ~ 24587635 (+)
G178485 NA other upstream 551322 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 806754 22689001 ~ 22709557 (+)
G178352 NA other upstream 970181 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 1014152 22493440 ~ 22502159 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other upstream 1024808 22486823 ~ 22491503 (+)
LOC103032894 LOC108424565 other downstream 928578 24447792 ~ 24454622 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 1724947 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 3311423 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 3394536 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 4005088 27524302 ~ 27525441 (+)

Expression


Co-expression Network