G178635


Basic Information

Item Value
gene id G178635
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 23515575 ~ 23515901 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242013
TatgaatattgtatttataagAAAAAGGTCTTTTTGGACCTCTAGTGTTTCATCTGCtaccattttaaagctctcATGCACCtgtacattaaacattaataccACATGAGGGAGCCAAACACTAAGAGTGACTCAGAGAGACAGTCATGCTGAGCCAGGATGAGTCTGCTAGTTTATACCGGTATTACTCAGGATTAACTCAGGATTGGTAGGAGCAGCTAATTTACAGTGATGCTGATTTAACCATTTGAAACTGTCCTACTTAATATGCAATCATAACATTCACCCATATTTCCAATTTTGGCAAGATAAGCGAGGATAAATCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242013 True 327 lncRNA 0.37 1 23515575 23515901

Neighbor

gene id symbol gene type direction distance location
ppp2cb ppp2cb,LOC107758729 coding upstream 864 23503307 ~ 23514711 (+)
LOC103034079 NA coding upstream 17957 23494154 ~ 23497618 (+)
LOC111188215 NA coding upstream 21275 23479537 ~ 23494300 (+)
purg NA coding upstream 53600 23459368 ~ 23461975 (+)
fut10 fut10 coding upstream 298317 23203476 ~ 23217258 (+)
LOC103037096 LOC108410414,LOC108277158,LOC105901021,LOC106603263 coding downstream 25949 23541850 ~ 23690355 (+)
LOC111195073 NA coding downstream 188086 23703987 ~ 23707849 (+)
gramd2b gramd3 coding downstream 956305 24472206 ~ 24482883 (+)
trnam-cau_40 NA coding downstream 985973 24501874 ~ 24501945 (+)
phax phax coding downstream 989736 24505637 ~ 24509580 (+)
G178632 NA non-coding upstream 15234 23499843 ~ 23500341 (+)
G178611 NA non-coding upstream 40370 23447089 ~ 23475205 (+)
G178624 wrn,LOC107715857,LOC107573262 non-coding upstream 82864 23427385 ~ 23432711 (+)
G178623 wrn non-coding upstream 89078 23425155 ~ 23426497 (+)
G178617 NA non-coding upstream 97232 23411105 ~ 23418343 (+)
G178634 NA non-coding downstream 410 23516311 ~ 23519214 (+)
G178781 NA non-coding downstream 672085 24187986 ~ 24191257 (+)
G178805 NA non-coding downstream 776074 24291975 ~ 24293344 (+)
LOC111195075 NA non-coding downstream 782211 24298112 ~ 24301847 (+)
G178844 NA non-coding downstream 996687 24512588 ~ 24513208 (+)
G178485 NA other upstream 550586 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 806018 22689001 ~ 22709557 (+)
G178352 NA other upstream 969445 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 1013416 22493440 ~ 22502159 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other upstream 1024072 22486823 ~ 22491503 (+)
LOC103032894 LOC108424565 other downstream 931891 24447792 ~ 24454622 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 1728260 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 3314736 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 3397849 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 4008401 27524302 ~ 27525441 (+)

Expression


Co-expression Network