G178672


Basic Information

Item Value
gene id G178672
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 23467858 ~ 23475206 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242054
caACCAACAACTCCACATTCTcctttgttttaaaaacatagGCTTACACATCGTCCCACTTAACAATCtgtaatatatatctatatctcttTTCTTATACTCTGTGACACATTACAAgttaataaaaaagacaaacattttaaacgtaagctttttaaaaaagttttatttaattagattGTCTATGGATCTTTTGGAGTTTATCCACACAGAGGTTGGGTAACTGTAAATAGGCACGGCAGTCTCGTACTTTACTTTGGTGCAGGCTTCCTCAACGGCTTACAGAGCTGAGAATTATCTTGGGTAACAGTACAGCTGcggtactctctctctttttctttctctctctctgatatcTCTAAATTCATCTGACCATTACTGCAGCCATTACTTCTGCTGGTGCAAACCTGCGCAGCTTGCTATATTTTGATCTTGGTCAGCCTTGATGTTGAGGTATCTGCTGACCGCGTCTGCAATTTACAGTTACGCCAAACTGCCCGTGTTTTAGGGAGGATATCTCGTCATACGGTTGTACGACCAATACGACCATACGGTGATTGACCAATAACTCAGCTTCAAGTTTGCTCTACTTCGTCAATTTGTCACTCGACATGCATGCACCCGGGGTCCGTATGAGCACCTTTATATATCGGAGTATAGCACCATTTTTTTCGAGAGTCAGTCAGGACCCAGCTGTCAGCATGCACAAACTTTAAGTATCCTTTCGAGTACGTATCCTACATGTCGCAACCGTTTACAAACATTACAAGGCAAttaatgaatattcatacagtaCCATACATGTTAAACGTGAACTAATACAGTACACACGTTAAAGAAAGTgctacaatacagaacaattGCTTTCTTGTTTTGAgtcatataatattctatagGACTATAGGAGGACACACTAAGGATGTACGTTACATTATCAAAAGATacaccaaaacattttttatttcaccatTTCTTTTTGAGTCTTTATCAAACACTTATACTTCTAAATTTCCAACTTCAGCAGCAGAGGCGCCGTGATcaacacaaagagaaaaaaacgaaacaaaaatGAACGAACCAACAAAGCTTCGATATCCACACCTTTACAGCACATTACCTACACGACTATCAGTTATTAACACAGAAAGAGGCCTGTGCGCCTCGGCCGAACCGCTGTTTTCAAACCGTCAAACCGTTTCTCGTTACTGGGTTCTCGTTACTCATTCTTCGTAAAGTCCTACTATTAAGAATGCTCAATTACCCCATTCACAATTTCTAAAGTTAGCTTTTTTTGTGCCTCGAAAGTACTGTAACAACAACTACGTTACATTTTGGTGATAAAGGCAACGTACAGTTCCAGTACCATCAAACCATAAACCTACACTAAATCATTACAAATCACAttgtaatgattttaaggcTTATGGGTTTAAAAAGTGTTACTTGAATACAAGTCAGGCTATGCATTACATATTAACAGTCCAATTCAATGAATTCAAGTGTGAAGAGTGTGAGAACTAAGATAgctgcaataaaataacattttaaatggccTCATAGTTTACTAAGTAATGGACTTGTGCACTTATGCAccaaataacataataataataataagaacgTTTCCTAAAATTTCCCCCAAAATCCCAAATCTACCAATCAAGCATCCCATCACCCTGAAAGGCCTGAAAAGCCTGGAAGGACCAGAATAATTCACCTGCTAATAAAGGATGCGAATGGTACCAAACAACATGTTACAGTATTGTGATAACATTTCATATTCTATACATACAcaacatattatatatgttctatatagtTTCTTTGAGGTCAAAAATAATAAGCATGTGTACAgttttaaagtgcatttttatcttttcaaaaagGGCTGGCCCGAAGAGCATTTTACAGGCTTCAGATGCTTGTTGATGTTTCCAAACTAACagaactcaaattatttaaaattcaaaataataaatatccaAAATATGCATTATATATGGCAGGTctctatttaaacattttgcaaATTCTCAATTGATCATAGGGGTTGACATAGTTGACATAGGGTAATGAAATAAGCAAAATGGAGATTTAACTTGGTGTGCTTTTGGCAGAAACATTATATCTTCTCATGATTTCTGTGTGGATTTATCTGGCTTTTAATTCCAGCACCGAGCCACCTGAGGAACTCGTGAAGCTTGCTCCAACATATATGATTCGACTTCAAGTAATTTTGACCTGATCCAGCTCATGACAATCTTAATAATTATGTGTGGAAGGACATGCAAAACAAAGCAAATGAACATGATGAATAAACACTTGATTACTAAAGCGATTCAGGCCAGCCCTAGCTTTATCTACTCTATCTGCACTACTGGAGTTCAGAGGTAACATCCTTTATGGCCTTATGGTCTTCATCACTTTTCAAAGAAGCAGCCTTTTTAcatagaaataaatgtaatattctaaaataatcTAGTAGCTGATTTTACCAATAGAATGTATGAATCTATAAGTTGTCAATGCCCAGTACGTGTGAGCCCTGAAGTAGAATAAATGAATAGGAGAAAAGAGCATTCATAAGAGGTAATAAACCACAGTTTTTCAAGAATTGGAAGAAAACAAACTAACTATTAAAAGTTGAAGACTACTAAGGGCAGGGTTTTGTCCTGCCGTTGCTATTCATTTGTCTGGAATAAGGTATAATTAAGGTCtggaaaataaacccaaaaagtTCACTTTAAGCAGAAAAGGTCCATAACAACAGGTGCTGCCCCTGGGACAGCTTTCATCATACTCATCATGTTCATCATACTCATATACATTTACAGTCAGTCATAGCAAAACGAGGAACTTAAAAGCAaagctgaaaacaaaacaataaaaaaacaagcaaaaaaaaaaaaaactgtcaatcACACATTATGTTCCTTGGTTAACTATAATCTTTATATAGTCTATAGGTTTGCTGCTCTCTTGGTGTACTGAGACCTTAGTTGTGACAACAATACAAAGCCAACACACTCACAGGTCACATGATTTCTGTTTTAGTGTCAAATCTGGAAATTCGGTCCAGTTTTTACATCAAGCGAGCATCGCAAGTGCTCTGGAGAGGCTAAGAATGTGCTGCATTTTCTTTGTAAAATGTGTACTTAATGGTGAGACGCTCTGTATGTGCGTGATTGTCATAATTATCACACAAGTGAGAAATCGATCCCTCCGTTTCGTCATATGGGTGAGAAACCGTCCCTTCTAATGAGTAATTCAAATAGTAAAAGaggcagcagcaacagcagcagcgtcGACGGCGgcagctaaaagtgctgttttaataaagtgcTAGAGGGAAGTGCTGCTTTTGATGTCTATGTTATGTTTTAGGACATTTTTTAATGGGTTAGCCATGTGAGCTTGGCCCACATGAGCCTTCCTTACGTTGCACTGTaaaatagatatagatagatagatataactCTAAAATGGATAGATCTAAAAATTGCAAGTGGTCAAAAATGCATCAAATAGCTAGTTTATAATATTATCTTATCTTACTTAATATCAAAGTCTTTTAAAGCACTAAGAACCAATAGGAATGGGCAAAAGGATTGCTTTTTTGTCGGCTGGACATTATTTGCATACGTACGTGAACATGCTCAAAGACGTCTTTCAGACCATACACATACACTCAATGAGAAACTCTGATAAGACATAAATAGGGGGGAAATAATTATAGGAAGAAAACTGACCACAAATATTTGTATCAACCTCTACGTTTCATTGTGCTATGAGGTGTGAACAAAGAAATGTCCTATagcacagatttttttgctgTCCTCATAGAAAAGGCATAAGGGCCACTGCCAGGCAGTTATGAGGCCAGCGCTCGACTTGCGACGCTGCTTTGCTTTGTGTCTTGTGAACACCTCTGTCCTATGAATGTTTCCAGAGACCATTTATTCTTACTTctttttaaaacttgttttctaaGCTTACTCTGTAATTGCACAACTGAAAGAACTAAAAGGCTTCCCCAGACAGCATAATCACTACCAGCAGCCTAGTCTGAGTAGAATTGGCATGGCTCCAGTTTGAGTCTAGGCTTGAGTCTGACCCAAATGCTCGGCTCACATTCAGGCCGAGGGCTGAATGTACCAACACCCCGGCTGCCAAGTGTAATACAACAATTGGCCCAAGCCATTTCTCCAGTTGTTGAGTATGAACCACATTTGACCAATACAGCCTTGATTCTTCATGCTATCTGGGACGGATGACTCTACTACCTACAAgtacatcaaaccaagcttttGTGCTGTCCACTGGAAAACAATGGTAACGCCAAGACAGCACCAAAACAACCGGCTTCCATTGGTAAAAAGCCCTGTTTTAAGTATGAAAGCAGTAAAGCCCTTAACATGCCTGTCAGGCAGATTTTCAGTATAATATAGCTTGTTAAGATATGACGTTTCTATCCATTGTTTGCTCTCTACTATAGATTGCGACTCTTTTTTACACGACCAGTTTTTACCGAACAGTTAAACAGTAGCTAAGCCCTAGATTTACAAAAGCAGGCCCAGGTCTTAGGTTCTATACTGCAGTATACATTTTCACAACAATTGGGCCTTTCACATCTCAATAAacagacaataaataaatatcacagGGTTGACAGTTTCTAtggcttaataaataattataataaaaaatgtattaaactcatttaatatattttttaaactttgctAATGCTGCGTTCATGAGGTTTTCTAAACACCAAATGGGAAAAATTCACTTGAATGACCATTCAACTTTGAAAAATTGCTGCTCAGAAAACCAGAAAAAGTTTCCTCCAATGCTCTGATTTCTGAGGTCATTTTAACATTGTTACATAacatttttggttattttattatttgataaCTACAGTGTACAGAGTAActactgtttttattgttaaaccaaaatatgtatattttgtcTCTTTTACACAAAAAGTCCAAATCTGACTGATTGTGATGCAAATTAATCAGTGTTAAAATCAGTTTACAGAAACTGGGTATGACTAGGTCTTTAAgactgatatacagtatttttagcactataaggctcattttaaatcctttaattttcccaaaaatcatcagtgcaccttttaatacGGTGCAcctcatgtatgaattttaccagtcaggttgtaaaagTAAATCCACTTTGCTGAAGTGCAGAGTTATAAagaagttttagtttagttctccagcagttttagcattagctgctaaccacatgATGCACTAGCTCCTGTGCTGTTCAGaggtattatctgcctgtactCTGTTGCTCACCCGgatagcactgttggagcagcattagcattacccactaactgcagcgctagctcctgtgctgttcagaggcgagttatttatatcagactgtatcctgtgcatttactgtgttaaaacaagctacatgggaccaaccgctagctaatatctccctggtttagtggaaaaaacacagggttcctcagtgtagctctgttgggTGGCACTAACTTCAAACCACtaactgctagcggttagccgctaatgcttcagctttagtgaaaatctgtaaatctaagcttactgtgaataaacagaagcactttactgaacaaaataaacagttctcaGGAGAGGAATTTGTGTAGATTTGCATCCAGCGTTTGTTTGacttatctgatttttttttttaaggattacagttttgtttacttagcttagcgtTACAGGACTCTTGatgaatttagaaggaaaacacgaCCAACACCCCTGTTGCTACTACTAGTTGCAAGTGTcacataaaatgcaccttataatctgatgcattttatgtatgaaaatagaccagaaaatagactgaTGCAccatatagtgtgaaaaatacggtaaatgagCTCAGTTCTGTTCTGTTGTGATGTGAGTTGGAGGAGTTAAACTGCGGTGGGCTGAATAAATTACTTTATAAAAGCATTTACtgcaataaaacatgttttttggcaatatacatttttaaatgcccAAGAAAAATCTGGATCATTTTAGACACTTCAGTCTATTCTCAgttttctgctgtttgagaTCTCTTCCTGTAATCGTTATTTAGGCAGTATCTCCTCACCACAGTGCGGTCAGGCTGCTTCAGACTGCGACTGGAATATTTTCTGAGTCCTCTGAGCTGTGTCTGTTCTGTCAGTAGGCTGTTGTTTTCATGCTTAGTACTTGTCCAGGGGCTGAGATGTACGCAGTGTGTTCCTGCTgaaggctgctgctgctgctgagatcACAAGACTCTGCTCAGCCCATCAGAAGGTCACATGTGGCTAAGCTAGCCTGAAAGATGCTACACTGACCCGGACTGTCTTCTGTCTTTGTATGTTTAGGAGAGCAAGTAAAATGTTACATACCAGATtcactacatttacatttggtttgtattaaaGTTGTTGTGGGagtgcagacagagagagaggatagagagaaGGGTCTGCGAGGTTATTGGATTATAGGGTCTGATAGACTCTTGGGTTTGGTATTTAATGGGTGTTTTTGGGAGTTGTACTGTTCCTTCCTCTTCTAAATTGgtgtcttttgtctttttgtgtgCTTGGAATGATGAAAGTTTTTTGTACTGATTTTTTTAGGTTGAATTGTGACTCTAGGTTTGGGTTTTTTCatgaataaacaatatttttaacacattttaaatcttACCTTGCTCTAGAAACAAATACCCAACAGGATTTTTTGACAtcttacaataattatattatagacTCATCATATAATATATGGACAAGATGTCAATATTTTTGGCTGACCTCAAtttttagtgtctaatgtgtctttttttcgtttataaaaagaaaatgctaGGTTAATTTTGCTAACTACCACTGAACTTGGACAATTTACCAATTAATTCAGTATATTTACATGCACATGCATAATCAGATTATCTACAGAATTATGTGATCTAAGAAATAGGATTATGCTGTTTACATCACTACCTGAATAATCTGACAACTGCAGAACATCTGATATTTCTATACATCCAAATTATAAAGATAAGTAATGGTATTTCTCAGTCaatgtatactttttttttttaaccagagtATTCTGGTTAAACATACAAAGAAAGCTCTAAATTCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242054 True 7197 lncRNA 0.37 2 23467858 23475206

Neighbor

gene id symbol gene type direction distance location
wrn NA coding downstream 14162 23411183 ~ 23453696 (-)
nrg1 nrg1 coding downstream 64383 23256525 ~ 23403475 (-)
ddx4 ddx4,LOC107740783,LOC107670045,LOC107715859,LOC107665473 coding downstream 560484 22899476 ~ 22907374 (-)
LOC103040684 NA coding downstream 570313 22881124 ~ 22897545 (-)
map3k1 map3k1,LOC107558252,LOC107670047 coding downstream 703446 22696309 ~ 22764412 (-)
ubxn8 NA coding upstream 40046 23515252 ~ 23521636 (-)
LOC103038694 LOC108427265,LOC108277159 coding upstream 231495 23706701 ~ 24078366 (-)
apbb1 apbb1 coding upstream 741966 24217172 ~ 24231664 (-)
LOC103022888 NA coding upstream 759716 24234922 ~ 24249982 (-)
LOC103023192 LOC108424566,LOC108277262,LOC105901058,LOC106603267,LOC105010780 coding upstream 776928 24252134 ~ 24289293 (-)
G178660 NA non-coding downstream 56981 23410614 ~ 23410877 (-)
G178575 NA non-coding downstream 212365 23255238 ~ 23255493 (-)
LOC111195071 NA non-coding downstream 245360 23221554 ~ 23222498 (-)
G178550 NA non-coding downstream 279057 23118708 ~ 23188801 (-)
G178528 NA non-coding downstream 536890 22930109 ~ 22930968 (-)
G178673 ppp2cb,LOC107758729 non-coding upstream 28148 23503354 ~ 23514708 (-)
G178686 NA non-coding upstream 55788 23530994 ~ 23536703 (-)
G178758 NA non-coding upstream 246932 23722138 ~ 23722899 (-)
G178775 NA non-coding upstream 577582 24052788 ~ 24056856 (-)
G178777 NA non-coding upstream 654844 24130050 ~ 24130344 (-)
sh2d4a sh2d4a other downstream 510632 22945161 ~ 22957226 (-)
LOC111195067 NA other downstream 526194 22935490 ~ 22941664 (-)
G178450 NA other downstream 795175 22672132 ~ 22672683 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other downstream 958075 22501318 ~ 22509783 (-)
G178426 NA other downstream 1011079 22455497 ~ 22456779 (-)
G178982 hint1,LOC107665476 other upstream 1655776 25130982 ~ 25134156 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other upstream 1728119 25203325 ~ 25207386 (-)
thsd1 thsd1 other upstream 1818469 25293675 ~ 25303083 (-)
LOC103043022 LOC108410630,LOC107556853 other upstream 1888726 25363932 ~ 25472244 (-)
LOC103047293 LOC108410718,LOC106581537 other upstream 2181049 25656255 ~ 25864474 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) purg purg misc NC_048569.1 CM023223.2 10920071 ~ 10928473 (+)
striped catfish (Pangasianodon hypophthalmus) G270002 NA non-coding NC_047611.1 CM018557.1 15944636 ~ 15945856 (+)
bowfin (Amia calva) G82252 NA non-coding CM030129.1 CM030129.1 38285755 ~ 38287535 (-)