G178686


Basic Information

Item Value
gene id G178686
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 23530994 ~ 23536703 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242080
ccacTGGTAGGAGCAAAAATCCCTACAAAAATATCCCTTTAAGCAGGTCAAAAAATATCTAACAAAACGACCCACAAAAACAGTCCATCAATTgtccaaacaaaaacagattCCCAAAAATCCCACTTAATCAATTGTCCAACAAAATCCCACAAAAACAGTCCATCAATTGTCCAAACAAAAAACAGGTTCAAAAAATCCCACTTAAATCCtttcagagagaaaaaaaacacaacagaacagCACGAAGGATAAAGTCAGGAATAACTCACAAAACGTTGGCAGGGCACGGCACGACAATCCGAGACAGATTACCCAAAATCCAGGGTTTAAATAAGGCAGGAGGGGGGGAAAGAACCAATGAGAGGCAAGGAAACAACAAGGTCAAACAGTCACAGGTGGATGGCATCACAGACAATCAAGGTTCAGAGTTCAGATCAAAAAGGCAGGTCAATACCCACAAATGTCCACCAGATGGAGACAAAGGGACCCGCAGATAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242080 True 501 lncRNA 0.42 3 23530994 23536703

Neighbor

gene id symbol gene type direction distance location
ubxn8 NA coding downstream 9358 23515252 ~ 23521636 (-)
wrn NA coding downstream 77298 23411183 ~ 23453696 (-)
nrg1 nrg1 coding downstream 127519 23256525 ~ 23403475 (-)
ddx4 ddx4,LOC107740783,LOC107670045,LOC107715859,LOC107665473 coding downstream 623620 22899476 ~ 22907374 (-)
LOC103040684 NA coding downstream 633449 22881124 ~ 22897545 (-)
LOC103038694 LOC108427265,LOC108277159 coding upstream 169998 23706701 ~ 24078366 (-)
apbb1 apbb1 coding upstream 680469 24217172 ~ 24231664 (-)
LOC103022888 NA coding upstream 698219 24234922 ~ 24249982 (-)
LOC103023192 LOC108424566,LOC108277262,LOC105901058,LOC106603267,LOC105010780 coding upstream 715431 24252134 ~ 24289293 (-)
aldh7a1 aldh7a1 coding upstream 953095 24489798 ~ 24500429 (-)
G178673 ppp2cb,LOC107758729 non-coding downstream 16286 23503354 ~ 23514708 (-)
G178672 NA non-coding downstream 55788 23467858 ~ 23475206 (-)
G178660 NA non-coding downstream 120117 23410614 ~ 23410877 (-)
G178575 NA non-coding downstream 275501 23255238 ~ 23255493 (-)
LOC111195071 NA non-coding downstream 308496 23221554 ~ 23222498 (-)
G178758 NA non-coding upstream 185435 23722138 ~ 23722899 (-)
G178775 NA non-coding upstream 516085 24052788 ~ 24056856 (-)
G178777 NA non-coding upstream 593347 24130050 ~ 24130344 (-)
G178809 NA non-coding upstream 613601 24150304 ~ 24169991 (-)
G178810 NA non-coding upstream 619971 24156674 ~ 24188773 (-)
sh2d4a sh2d4a other downstream 573768 22945161 ~ 22957226 (-)
LOC111195067 NA other downstream 589330 22935490 ~ 22941664 (-)
G178450 NA other downstream 858311 22672132 ~ 22672683 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other downstream 1021211 22501318 ~ 22509783 (-)
G178426 NA other downstream 1074215 22455497 ~ 22456779 (-)
G178982 hint1,LOC107665476 other upstream 1594279 25130982 ~ 25134156 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other upstream 1666622 25203325 ~ 25207386 (-)
thsd1 thsd1 other upstream 1756972 25293675 ~ 25303083 (-)
LOC103043022 LOC108410630,LOC107556853 other upstream 1827229 25363932 ~ 25472244 (-)
LOC103047293 LOC108410718,LOC106581537 other upstream 2119552 25656255 ~ 25864474 (-)

Expression


Co-expression Network