G178805


Basic Information

Item Value
gene id G178805
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 24291975 ~ 24293344 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242218
TAATTTATTGGGAACAATCATTAATGTTTGGTTAAATAATCTAGTATTTCTTCACTCTGGTGCTGAAGGTCCGCTGCGCTGCTCTTTACTGTGTTTCCGCTTTACTCTGTTTTCATTAAAAGCCTCTCAGTCTTAAAACAGCGGCACTAAAACAGGCGGAGCGGTGGGCCTCCAGCACCAGTAGTGATTACCCTGCCAGATTAGAGTAGAGTAGCGCGGAGGAGCTCTTTTAGTTCCGGTGAGTAATTTAGCTAGCTGACTGTTTCAGCTCTCTGTGAAGCGCGGTCTTCTTATAATACTAAGCTACAGCGTGGTAAGACTATTTAAAGCGTGTTAATGGCGAATAACGCTGTgagatagctaacgctagcgagTGGAGGATGGCTGGCTAGgctaattagctacagttagctcgATTACctgcagcagctgcttgttcagaaacaaaacacCCAGCGCTGTTTAAGAGCTGCTTCACGAGCTTCTCTCACAGCACAGGGTTTGTTTTTCTCAATCAGCAGCTGCTTTTAAACCACGCTTTAGTTCAGTAATAAGATCGCGCTTCACCGAGAGCTGAAACAGTcggttagctaacgctagttaAAATACCTAACAGGACTGAAAGAGCGCCTCTCGGTTCTCCGGTCTAATCCGGCGGGGTGTTTGTAGATATTTAACTTCTGAAttttattaatactgaattaaagtaTGGTAATCTGGCTAATGTTAAAAAGTCAACTGGCTTTTTACCAAAACA
>TU242219
TAATTTATTGGGAACAATCATTAATGTTTGGTTAAATAATCTAGTATTTCTTCACTCTGGTGCTGAAGGTCCGCTGCGCTGCTCTTTACTGTGTTTCCGCTTTACTCTGTTTTCATTAAAAGCCTCTCAGTCTTAAAACAGCGGCACTAAAACAGGCGGAGCGGTGGGCCTCCAGCACCAGTAGTGATTACCCTGCCAGATTAGAGTAGAGTAGCGCGGAGGAGCTCTTTTAGTTCCGGTGAGTAATTTAGCTAGCTGACTGTTTCAGCTCTCTGTGAAGCGCGGTCTTCTTATAATACTAAGCTACAGCGTGGTAAGACTATTTAAAGCGTGTTAATGGCGAATAACGCTGTgagatagctaacgctagcgagTGGAGGATGGCTGGCTAGgctaattagctacagttagctcgATTACCTGCAGCAGCTGCTTGTTCAGAATCAAAACACCCAGCGCTGTTTAAGAGCTGCTTCACGAGCTTCTCTTACAGCATACTAAGCTACAGCGTGGTAAGACTATTTAAAGCGTGTAAATGGCGAATAACGCtgtaagatagctaacgctagcgagCTAGCGAGTGGAGGATGGCtggctaagctaattagctacagttagctcgATTACctgcagcagctgcttgttcagaaacaaaacacCCAGCGCTGTTTAAGAGCTGCTTCACGAGCTTCTCTCACAGCACAGGGTTTGTTTTTCTCAATCAGCAGCTGCTTTTAAACCACGCTTTAGTTCAGTAATAAGATCGCGCTTCACCGAGAGCTGAAACAGTcggttagctaacgctagttaAAATACCTAACAGGACTGAAAGAGCGCCTCTCGGTTCTCCGGTCTAATCCGGCGGGGTGTTTGTAGATATTTAACTTCTGAAttttattaatactgaattaaagtaTGGTAATCTGGCTAATGTTAAAAAGTCAACTGGCTTTTTACCAAAACA
>TU242222
TAATTTATTGGGAACAATCATTAATGTTTGGTTAAATAATCTAGTATTTCTTCACTCTGGTGCTGAAGGTCCGCTGCGCTGCTCTTTACTGTGTTTCCGCTTTACTCTGTTTTCATTAAAAGCCTCTCAGTCTTAAAACAGCGGCACTAAAACAGGCGGAGCGGTGGGCCTCCAGCACCAGTAGTGATTACCCTGCCAGATTAGAGTAGAGTAGCGCGGAGGAGCTCTTTTAGTTCCGGTGAGTAATTTAGCTAGCTGACTGTTTCAGCTCTCTGTGAAGCGCGGTCTTCTTATAATACTAAGCTACAGCGTGGTAAGACTATTTAAAGCGTGTTAATGGCGAATAACGCtgtaagatagctaacgctagcgagCTAGCGAGTGGAGGATGGCtggctaagctaattagctacagttagctcgATTACCTGCAGCAGCTGCTTGTTCAGAATCAAAACACCCAGCGCTGTTTAAGAGCTGCTTCACGAGCTTCTCTTACAGCATACTAAGCTACAGCGTGGTAAGACTATTTAAAGCGTGTAAATGGCGAATAACGCtgtaagatagctaacgctagcgagTGGAGGATGGCTGGCTAGgctaattagctacagttagctcgATTACctgcagcagctgcttgttcagaaacaaaacacCCAGCGCTGTTTAAGAGCTGCTTCACGAGCTTCTCTCACAGCACAGGGTTTGTTTTTCTCAATCAGCAGCTGCTTTTAAACCACGCTTTAGTTCAGTAATAAGATCGCGCTTCACCGAGAGCTGAAACAGTcggttagctaacgctagttaAAATACCTAACAGGACTGAAAGAGCGCCTCTCGGTTCTCCGGTCTAATCCGGCGGGGTGTTTGTAGATATTTAACTTCTGAAttttattaatactgaattaaagtaTGGTAATCTGGCTAATGTTAAAAAGTCAACTGGCTTTTTACCAAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242218 False 757 lncRNA 0.44 2 24291975 24293344
TU242219 True 964 lncRNA 0.44 2 24291975 24293344
TU242222 False 964 lncRNA 0.44 3 24291975 24293344

Neighbor

gene id symbol gene type direction distance location
LOC111195073 NA coding upstream 584126 23703987 ~ 23707849 (+)
LOC103037096 LOC108410414,LOC108277158,LOC105901021,LOC106603263 coding upstream 601620 23541850 ~ 23690355 (+)
ppp2cb ppp2cb,LOC107758729 coding upstream 777264 23503307 ~ 23514711 (+)
LOC103034079 NA coding upstream 794357 23494154 ~ 23497618 (+)
LOC111188215 NA coding upstream 797675 23479537 ~ 23494300 (+)
gramd2b gramd3 coding downstream 178862 24472206 ~ 24482883 (+)
trnam-cau_40 NA coding downstream 208530 24501874 ~ 24501945 (+)
phax phax coding downstream 212293 24505637 ~ 24509580 (+)
lmnb1 lmnb1 coding downstream 231469 24524813 ~ 24542250 (+)
LOC103034699 NA coding downstream 297629 24590973 ~ 24596595 (+)
G178781 NA non-coding upstream 100718 24187986 ~ 24191257 (+)
G178634 NA non-coding upstream 772761 23516311 ~ 23519214 (+)
G178635 NA non-coding upstream 776074 23515575 ~ 23515901 (+)
G178632 NA non-coding upstream 791634 23499843 ~ 23500341 (+)
G178611 NA non-coding upstream 816770 23447089 ~ 23475205 (+)
LOC111195075 NA non-coding downstream 4768 24298112 ~ 24301847 (+)
G178844 NA non-coding downstream 219244 24512588 ~ 24513208 (+)
G178853 NA non-coding downstream 293163 24586507 ~ 24587635 (+)
LOC111195077 NA non-coding downstream 305529 24598873 ~ 24599611 (+)
G178873 NA non-coding downstream 365063 24658407 ~ 24678663 (+)
G178485 NA other upstream 1326986 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 1582418 22689001 ~ 22709557 (+)
G178352 NA other upstream 1745845 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 1789816 22493440 ~ 22502159 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other upstream 1800472 22486823 ~ 22491503 (+)
LOC103032894 LOC108424565 other downstream 154448 24447792 ~ 24454622 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 950817 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 2537293 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 2620406 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 3230958 27524302 ~ 27525441 (+)

Expression


Co-expression Network