G178810


Basic Information

Item Value
gene id G178810
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 24156674 ~ 24188773 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242233
TCGGGGCCCGGAGGAGGAGGCGCTGAGGCCGAAGCAGGTGGAGGGCGTGCCGCGCCTGCGGCGCAAGAGGAGCCGTAGCGAAGAGTTGAGCGGGTGACGTCATCGGACCGCGACGCCGGTGCGGATCCTGCGCGCTGTTTTCCACCCAACGAGGAGAGATAGAGCGAAAAAAGTTCCGCTTTGGGAGCAGAACGGGGGAAAGGGACGCCGCGGTCCTTCAAAACCCGCTGTAACTTAACAACAGTCCAATCGGACATGCGAGGAGGCTGGGATTTACCAGAAGAGAGGGGCTCGGCCAGGGAAGGGGGTGCGGGGCCGGCTAAGGAAGCCGGGCGCCCAAAGCGGCGAGCCCGACCAGGAGGAGTAGGGGAAGGAGGAGAAGAGCGACGGGAGCGCTGAGATCCGGGGGTGCGTTGGTGAGGACGACCAGCCCGGGAGGAAGAATgggtagaaccaggagtagaaccaggagtagccggaatggagacGACAGACCTCAAGCGATGAGCCCGGCGAGAGGGAGCAGGAGCAGAGACAGGCTGGCTGGGAGGGAAGAGGTCCTCATCGGAGGCGGTGAGTTGGAGATCCATGGGGAGCGAGCAAATGCTGGCAGggggaatcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242233 True 623 lncRNA 0.64 2 24156674 24188773

Neighbor

gene id symbol gene type direction distance location
LOC103038694 LOC108427265,LOC108277159 coding downstream 78308 23706701 ~ 24078366 (-)
ubxn8 NA coding downstream 635038 23515252 ~ 23521636 (-)
wrn NA coding downstream 702978 23411183 ~ 23453696 (-)
nrg1 nrg1 coding downstream 753199 23256525 ~ 23403475 (-)
ddx4 ddx4,LOC107740783,LOC107670045,LOC107715859,LOC107665473 coding downstream 1249300 22899476 ~ 22907374 (-)
apbb1 apbb1 coding upstream 28399 24217172 ~ 24231664 (-)
LOC103022888 NA coding upstream 46149 24234922 ~ 24249982 (-)
LOC103023192 LOC108424566,LOC108277262,LOC105901058,LOC106603267,LOC105010780 coding upstream 63361 24252134 ~ 24289293 (-)
aldh7a1 aldh7a1 coding upstream 301025 24489798 ~ 24500429 (-)
LOC103023834 LOC108424422 coding upstream 323058 24511831 ~ 24516598 (-)
G178777 NA non-coding downstream 26330 24130050 ~ 24130344 (-)
G178775 NA non-coding downstream 99818 24052788 ~ 24056856 (-)
G178758 NA non-coding downstream 433775 23722138 ~ 23722899 (-)
G178686 NA non-coding downstream 619971 23530994 ~ 23536703 (-)
G178673 ppp2cb,LOC107758729 non-coding downstream 641966 23503354 ~ 23514708 (-)
LOC111195074 NA non-coding upstream 8428 24197201 ~ 24198148 (-)
G178823 NA non-coding upstream 103119 24291892 ~ 24293344 (-)
G178855 gramd3 non-coding upstream 283659 24472432 ~ 24477519 (-)
G178859 phax non-coding upstream 316292 24505065 ~ 24509510 (-)
G178862 lmnb1 non-coding upstream 336157 24524930 ~ 24542747 (-)
sh2d4a sh2d4a other downstream 1199448 22945161 ~ 22957226 (-)
LOC111195067 NA other downstream 1215010 22935490 ~ 22941664 (-)
G178450 NA other downstream 1483991 22672132 ~ 22672683 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other downstream 1646891 22501318 ~ 22509783 (-)
G178426 NA other downstream 1699895 22455497 ~ 22456779 (-)
G178982 hint1,LOC107665476 other upstream 942209 25130982 ~ 25134156 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other upstream 1014552 25203325 ~ 25207386 (-)
thsd1 thsd1 other upstream 1104902 25293675 ~ 25303083 (-)
LOC103043022 LOC108410630,LOC107556853 other upstream 1175159 25363932 ~ 25472244 (-)
LOC103047293 LOC108410718,LOC106581537 other upstream 1467482 25656255 ~ 25864474 (-)

Expression


Co-expression Network