LOC103032894 (LOC108424565)


Basic Information

Item Value
gene id LOC103032894
gene name LOC108424565
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 24447792 ~ 24454622 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242273
AGCGGAACAGGAGCGGAGCTGTAAAGAGCCGtgttactgttttatttctgcCTTTATTTAGGTTAATGTGGATTTTTATACTCTGCTAGCGCTAACACTTAAATTAGAGTCGGGTTTAGCTCCTCTAGCGCTGATTTTACGCAGGAATCGCCtcagaaaaaacactttttgatttttttccgGTGGCGTGTGTCGGTTAGGACGACCGGAGCCCGAAACGGAGCTATGAGTGGCTTTGGAGTAATTCTGCGACCCTGAAAGTGTCGTCTGAGCTCGACTGGACCGACATTCTGCGTGTTGTGGATTATTTTAGCTAAAGAAAGGCGTGTTATGGACCTGACTCTTAGCCGTTAAGTGTTTTTACCGGGCAGAATGTATCCTGTCTGATCCTGCGGTCCGGACCCTGACAGCCCCCCGTCGAGTCTCGCTTTCAAATGAAAGATACTTTCGGTGGAGCTACAGTGCACCGCTTTCTACACCCCGATAAAGAGCACGCAGACTTTCCCTTCAGAAAGGTCTCTGGGATTAAGAGCTCGCCTGCTGCTGACATTATTAACCTGAACGTTACCTCGCTGAAACCCTCGGATCCTTTCCGCCAGGCGAAGCGGCTCCCCGTTAAAATCCTAACCATGTTAACGGCACATTCAGGACACTTACTGCACCCGGAGTATCTCCAGCCCCTCACATCAGCGCCTGTGAGCATCGAGCTGGATGCTAAGAAGAGTCCGCTGGCCCTGTTGGCTCAGACCTGTTCTCAAATAGCTCCCAGCCATGGCAGGAATCAACACCCACACTCTATTTCTGTCATCCCTGCTGCTCATGTCGAGGAGAGATACATCACCGCCG
>XM_007252428.3
GATGCAGACAGCGGCTATTGGACGGCAGCTCCCGTGCATCTGAAGGTCTTCCTCGCGCTCGTAACGTACGTGAAGTATTACGGGACGGAGCGGAACAGGAGCGGAGCTGTAAAGAGCCGtgttactgttttatttctgcCTTTATTTAGGTTAATGTGGATTTTTATACTCTGCTAGCGCTAACACTTAAATTAGAGTCGGGTTTAGCTCCTCTAGCGCTGATTTTACGCAGGAATCGCCtcagaaaaaacactttttgatttttttccgGTGGCGTGTGTCGGTTAGGACGACCGGAGCCCGAAACGGAGCTATGAGTGGCTTTGGAGTAATTCTGCGACCCTGAAAGTGTCGTCTGAGCTCGACTGGACCGACATTCTGCGTGTTGTGGATTATTTTAGCTAAAGAAAGGCGTGTTATGGACCTGACTCTTAGCCGTTAAGTGTTTTTACCGGGCAGAATGTATCCTGTCTGATCCTGCGGTCCGGACCCTGACAGCCCCCCGTCGAGTCTCGCTTTCAAATGAAAGATACTTTCGGTGGAGCTACAGTGCACCGCTTTCTACACCCCGATAAAGAGCACGCAGACTTTCCCTTCAGAAAGGTCTCTGGGATTAAGAGCTCGCCTGCTGCTGACATTATTAACCTGAACGTTACCTCGCTGAAACCCTCGGATCCTTTCCGCCAGGCGAAGCGGCTCCCCGTTAAAATCCTAACCATGTTAACGGCACATTCAGGACACTTACTGCACCCGGAGTATCTCCAGCCCCTCACATCAGCGCCTGTGAGCATCGAGCTGGATGCTAAGAAGAGTCCGCTGGCCCTGTTGGCTCAGACCTGTTCTCAAATAGGTAAGCCAGATCCTCCGTCATCTTCCAAACTGGCCTCAGTCACTTCCAGTGGACTCAGCGACAAAGACTCATCTcgttcctcctcctccaccctgAAACTGGGAGAGCAACGACCCTCGCTGGATGACAAGTCCAGCTTCAAGCCCTATTCCAAAATAGGCACAGACAGCCAGAGGGATGGtactaacagcagcagcagcactaacAAGCCTGGCTTTTGTCTTCCCATGGGTGGAGGTAATGGCAGCAATAGCACACAGAGCTGTCAGTCCCACCCTCCTCGTACCATTTCTCCGAACTCCAGAGTGGGCTCCCCACCACAGACGCAGACGCACAGGCCAAGCGCATCCCCCAGCACTGGACGTTCGTCCGGCCACTCGCAGACTGTGAATGGGGAGTTGCAAACCACAGAGTCGACAAACTCTGACAACAGTAGCAATCTAAAGAAGGAGGCAGAGTCAAGTAAGGCTAGTCTGGACAGTCCCCAACTGGCCAACTCGAGCCATGCCAGAGCAAGTGCCAACTCCAGCAGTGGCAGTTCGGACAGTAGCCCCAGTCATGAGGGCAAGGCAGAAACGCAACCATCACAGCCTGGAGGATTGGGGCCTGTTTCTATTTCTCCCTTCAAGTCAAGTCACCCTGTTTTTCCTCTTCCATCTTCCAGTATGGGCTATCATGGGTCTATTGTGGGCACTTACGCTGGGTATCCTGGTCAGTTTGTCCCTGGCTTGGATCCTACCAAGTCCAGTCTTGGGGGTGCTGGTGTAGGGGTTGCAGGAAAACACCCAAGCTCTAGCCCACTGACTGGAGCTTCTCCTCCCTCTTTTATGCAAGGCCTCTGCAGGGACCCGTACTGTTTAAGCTACCCAAATGCTCCTCATCTTGGTGGTAGCAACTGCAGCACATGTGTTCATGACCCTTCCACTCTAAAGAGTGGCTTCCCACTAGTCTATCCTACCCATCCTCTTCactccctccaccagtcttccaGCGTCACCCCCTCACTGTCGCACCCCCTCTACACATACGGCTTCATGCTGGCCAACGAGCCTCTGCCACACGCCTGTAACTGGGTCTCCGCTGGTGGACCTTGCGACAAACGCTTTGCAACCTCAGAAGAACTCTTGGCCCACTTGCGCACGCACACCTCACTGCCAGGTGTGGATGGCAAGCTCCTATCTGCATacccctcttcttcttcctctgctGCAGCAGCCACTGCTTCCTGCCACCTTCACCTGCCTCCCCAGAGCAGCCCAGCGTCTCTTCCCACCTCCTTCTCCCTCAGAGCACCTCCTAGCCTGGGGCTAGCACGCTACCATCCCTACAGCAAAATGCATCTACCCACAGCACCATCTTTGCCCATGCACTCTTTACCAGCTTCTGCGCCCTACTACTCCCATTACGCCCTCTACAGTCAAAGACTGGGATCTGCTTCAGCTCTTGGCTACCAATGAGGCAGCACACAGACTCTCCACACTTGAGAATCTTAAAGAGCCAGAACAAGCAGAGTGCTTGCATGATGACTGCTAAAATATCCAACTGATACtggacactgtttttttttaccctggGTACCAGCTGTCAGTGCTGAGAAAGGACTAAATGAGTGGGACAAAAAGGAAATTTATAGTCCCTTTCGGCTGAGATTATGGGTATGCAGGGTGCATGCAAGCTTGAAACAGTGTATAAGACTGAAGCGCCGACACAGTTTTCAAAcagaattgtatttattttttaacaagcGCTTGGCTTGCCAGTTTATAATCCAAGACACAATGTTCTTAATTATTGTTTACTTTTGcaaaatcagacttcattaattaatttcacTATTAATTTCACTTACGTTCTCCGCCCATCATTTGTACACATTATTGGTGCAAACTTCAGaaatttctgttctgttttgttctgtttgttctTCATGAGACAGATGTCCTCTTCTATGTTGCCTCTGTTTCTTTTGTCTGTGCGGTATGAATGTGCATGTCTGAGTCCTTTTGGACTTTCTAAAtactccttttttattttaaacagcttACAAATAAATGGTATAAagagctgtattattttttgtaatgtgtCAAGATTATTAGGCTGGTTAAGGTGCCGGttcaatgagaaaaaaaagaaaactagcGATGGCAGTGCTGTCCAACTTTGGagttataattttgttaaataaatgaaatggttatatttaaa

Function

NR:

description
PREDICTED: zinc finger protein 703-like

GO:

id name namespace
GO:0017015 regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0031065 positive regulation of histone deacetylation biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0034333 adherens junction assembly biological_process
GO:0034111 negative regulation of homotypic cell-cell adhesion biological_process
GO:0030902 hindbrain development biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0060828 regulation of canonical Wnt signaling pathway biological_process
GO:0016363 nuclear matrix cellular_component
GO:0000118 histone deacetylase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0042802 identical protein binding molecular_function
GO:0042826 histone deacetylase binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242273 False 846 TUCP 0.50 3 24447880 24454622
XM_007252428.3 True 3058 mRNA 0.49 2 24447792 24451993

Neighbor

gene id symbol gene type direction distance location
LOC111195073 NA coding upstream 739943 23703987 ~ 23707849 (+)
LOC103037096 LOC108410414,LOC108277158,LOC105901021,LOC106603263 coding upstream 757437 23541850 ~ 23690355 (+)
ppp2cb ppp2cb,LOC107758729 coding upstream 933081 23503307 ~ 23514711 (+)
LOC103034079 NA coding upstream 950174 23494154 ~ 23497618 (+)
LOC111188215 NA coding upstream 953492 23479537 ~ 23494300 (+)
gramd2b gramd3 coding downstream 17584 24472206 ~ 24482883 (+)
trnam-cau_40 NA coding downstream 47252 24501874 ~ 24501945 (+)
phax phax coding downstream 51015 24505637 ~ 24509580 (+)
lmnb1 lmnb1 coding downstream 70191 24524813 ~ 24542250 (+)
LOC103034699 NA coding downstream 136351 24590973 ~ 24596595 (+)
LOC111195075 NA non-coding upstream 145945 24298112 ~ 24301847 (+)
G178805 NA non-coding upstream 154448 24291975 ~ 24293344 (+)
G178781 NA non-coding upstream 256535 24187986 ~ 24191257 (+)
G178634 NA non-coding upstream 928578 23516311 ~ 23519214 (+)
G178635 NA non-coding upstream 931891 23515575 ~ 23515901 (+)
G178844 NA non-coding downstream 57966 24512588 ~ 24513208 (+)
G178853 NA non-coding downstream 131885 24586507 ~ 24587635 (+)
LOC111195077 NA non-coding downstream 144251 24598873 ~ 24599611 (+)
G178873 NA non-coding downstream 203785 24658407 ~ 24678663 (+)
G178896 NA non-coding downstream 340861 24795483 ~ 24817313 (+)
G178485 NA other upstream 1482803 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 1738235 22689001 ~ 22709557 (+)
G178352 NA other upstream 1901662 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 1945633 22493440 ~ 22502159 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other upstream 1956289 22486823 ~ 22491503 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 789539 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 2376015 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 2459128 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 3069680 27524302 ~ 27525441 (+)
G180235 erg other downstream 6684722 31139344 ~ 31151095 (+)

Expression


Co-expression Network