G178844


Basic Information

Item Value
gene id G178844
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 24512588 ~ 24513208 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242294
GGATTGAGATTTAAACATGGTGACTCTTCCTTTAATAACACTGTAGAATAACAATAGAGAACTGTAGAATTGGATAACACTTGAAAAGCAGTAAACTACTCACCATCATACATCAAGGTGTCTGGATCTGTGGTATTTTTGAGTCATGATCAATATAACATGCCTGTTGTGTCTGCAGTGTAgctgtttaaatttcatacaatcactgtgtaacaatacaaaatatttcaaGAGTTACTCTGAATGAACAGATTACAAGAATAAAGGAACGTTAATCTTCACTTTAAGGAACTCtttagacattttaaacagttttcctAGGGTGCACAGCTTCAGCTGCAGACatggcagtgctgaggtaaagctGAAGTTATCCACACTATCATGATAAAATAtcatagcaaatatatatttttttgaaaatctGCCACTCTGTCCACAATGTTTCATCAGATGCCAATTTTCCGCACAATTGTCAACCATGTTGTGCAACTTgccatgacagggtggacacatGAATGACAggtaattataaataaaataaaaagtgcaattcagaaaaaaaagttgctagttttacttaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242294 True 587 lncRNA 0.34 2 24512588 24513208

Neighbor

gene id symbol gene type direction distance location
phax phax coding upstream 3008 24505637 ~ 24509580 (+)
trnam-cau_40 NA coding upstream 10643 24501874 ~ 24501945 (+)
gramd2b gramd3 coding upstream 29705 24472206 ~ 24482883 (+)
LOC111195073 NA coding upstream 804739 23703987 ~ 23707849 (+)
LOC103037096 LOC108410414,LOC108277158,LOC105901021,LOC106603263 coding upstream 822233 23541850 ~ 23690355 (+)
lmnb1 lmnb1 coding downstream 11605 24524813 ~ 24542250 (+)
LOC103034699 NA coding downstream 77765 24590973 ~ 24596595 (+)
megf10 megf10,LOC107705845 coding downstream 90448 24603656 ~ 24676046 (+)
prrc1 prrc1,LOC107572184,LOC107705848,LOC107673757 coding downstream 170869 24684077 ~ 24699125 (+)
ctxn3 ctxn3,LOC107711251 coding downstream 212869 24726077 ~ 24739475 (+)
LOC111195075 NA non-coding upstream 210741 24298112 ~ 24301847 (+)
G178805 NA non-coding upstream 219244 24291975 ~ 24293344 (+)
G178781 NA non-coding upstream 321331 24187986 ~ 24191257 (+)
G178634 NA non-coding upstream 993374 23516311 ~ 23519214 (+)
G178635 NA non-coding upstream 996687 23515575 ~ 23515901 (+)
G178853 NA non-coding downstream 73299 24586507 ~ 24587635 (+)
LOC111195077 NA non-coding downstream 85665 24598873 ~ 24599611 (+)
G178873 NA non-coding downstream 145199 24658407 ~ 24678663 (+)
G178896 NA non-coding downstream 282275 24795483 ~ 24817313 (+)
G178928 NA non-coding downstream 448090 24961298 ~ 24962524 (+)
LOC103032894 LOC108424565 other upstream 57966 24447792 ~ 24454622 (+)
G178485 NA other upstream 1547599 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 1803031 22689001 ~ 22709557 (+)
G178352 NA other upstream 1966458 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 2010429 22493440 ~ 22502159 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 730953 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 2317429 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 2400542 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 3011094 27524302 ~ 27525441 (+)
G180235 erg other downstream 6626136 31139344 ~ 31151095 (+)

Expression


Co-expression Network