G178855 (gramd3)


Basic Information

Item Value
gene id G178855
gene name gramd3
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 24472432 ~ 24477519 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242313
CACTTTGGAATGGAAACAAATCCAGTTATCAGAGACAAAAAGCCTTCCCTGATAAAGAATGTCTTTCTGTAGAGCGCAGGTGTAACTTTGTTTGAGTATCTCATCTTTACTTATTTCTTTGAAGAGCTTATGATACTGGGCATTTGCTTtggaaaaCTGGCTGTATCTGGCAGACTTCCTCTCCAGCTTCGACTCACAGTCTGTTGGGCTTTGTGAAAGCGAGGCCTGGTCAACCGgcttaaacCTCATTAGAGCTGTTTTCTTCCTGTTCTCTGAGAGATCAGACTCAGTGTCCACAGACAGCTGGGACTCAAACACTGACTTCCCAGCTCTTCTCTGCCTCTCTTCTCCATTCTCTGCCTCGGGACTGGAAATATTTGGCAAGTCCACAACAGCAAACTTGTTCTGAATTCTGGAGTCTTTTCTCTCGGTCCTGATGGGTTTACCCAGGTCCGGAGAAGAAAACGGAGTCTGGGCTCTGTCTGCCTGATCGATCATAAGCACCATTTTCGCAAGGGACTGCAAAAGCGCTCGCCTCCCCCGCCTGCAGAGCCCAGTCTCCTCAGAGAAGTTCAGACCAACTCTAGGCACAGTTCCTCCAAGGGGTTAAATTTGGGAAGGAGGTCCTTATCCAGG

Function

symbol description
gramd3 Predicted to enable identical protein binding activity. Predicted to be located in cytoplasmic microtubule. Orthologous to human GRAMD2B (GRAM domain containing 2B).

NR:

description
PREDICTED: GRAM domain-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242313 True 636 lncRNA 0.48 5 24472432 24477519

Neighbor

gene id symbol gene type direction distance location
LOC103023192 LOC108424566,LOC108277262,LOC105901058,LOC106603267,LOC105010780 coding downstream 183139 24252134 ~ 24289293 (-)
LOC103022888 NA coding downstream 222450 24234922 ~ 24249982 (-)
apbb1 apbb1 coding downstream 240768 24217172 ~ 24231664 (-)
LOC103038694 LOC108427265,LOC108277159 coding downstream 394066 23706701 ~ 24078366 (-)
ubxn8 NA coding downstream 950796 23515252 ~ 23521636 (-)
aldh7a1 aldh7a1 coding upstream 12279 24489798 ~ 24500429 (-)
LOC103023834 LOC108424422 coding upstream 34312 24511831 ~ 24516598 (-)
march3 march3 coding upstream 69484 24547003 ~ 24586405 (-)
c20h5orf63 NA coding upstream 109741 24587260 ~ 24589663 (-)
LOC103037512 LOC103037512,LOC108423775 coding upstream 485107 24962626 ~ 24980089 (-)
G178823 NA non-coding downstream 179088 24291892 ~ 24293344 (-)
LOC111195074 NA non-coding downstream 274284 24197201 ~ 24198148 (-)
G178810 NA non-coding downstream 283659 24156674 ~ 24188773 (-)
G178809 NA non-coding downstream 302441 24150304 ~ 24169991 (-)
G178777 NA non-coding downstream 342088 24130050 ~ 24130344 (-)
G178859 phax non-coding upstream 27546 24505065 ~ 24509510 (-)
G178862 lmnb1 non-coding upstream 47411 24524930 ~ 24542747 (-)
G178864 NA non-coding upstream 53275 24530794 ~ 24533188 (-)
G178868 NA non-coding upstream 104966 24582485 ~ 24583669 (-)
LOC111195076 NA non-coding upstream 117726 24595245 ~ 24602315 (-)
sh2d4a sh2d4a other downstream 1515206 22945161 ~ 22957226 (-)
LOC111195067 NA other downstream 1530768 22935490 ~ 22941664 (-)
G178450 NA other downstream 1799749 22672132 ~ 22672683 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other downstream 1962649 22501318 ~ 22509783 (-)
G178426 NA other downstream 2015653 22455497 ~ 22456779 (-)
G178982 hint1,LOC107665476 other upstream 653463 25130982 ~ 25134156 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other upstream 725806 25203325 ~ 25207386 (-)
thsd1 thsd1 other upstream 816156 25293675 ~ 25303083 (-)
LOC103043022 LOC108410630,LOC107556853 other upstream 886413 25363932 ~ 25472244 (-)
LOC103047293 LOC108410718,LOC106581537 other upstream 1178736 25656255 ~ 25864474 (-)

Expression


Co-expression Network