G178859 (phax)


Basic Information

Item Value
gene id G178859
gene name phax
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 24505065 ~ 24509510 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242318
AGGTTTAGTGAGATTTTCCTAACAGCTGGGTTTCCAGATATTTTCCACCATTTACCTAGGGAATGATTCCAATTTAGTGCACTACTATGCTTAATTTATGTTAGAAAATTTAACAAACAGCCATTTAATACTAGTAGAGAATCAGAGCAAGTGCAGTTTTAATAAGCctcactaaaaaatatataaagtataaggctatcattaaacaaatatgtttaaacTCAACAAAAGAAAATGACTCCAAAAACTCATGTTAACAAGACATCAGTTTCATGTCCTTCTAGTGCAGTCCAGTTGTGTCCATTTTCTCCAACAGAAGAGGAAGGTTTTTAAATTAGTGTCCCCAAAACGCATCAGCGGCCGAAACCAGGGAGCAAGTCAAAGATACATATCTGAAAGTAACTGAAAGCTGTTTAACCCATCCTGAATATTCTGACTGTGGGATTTAATCATAACAGAAGGTTTACTGTCCTAATGTATCATTGATGTCCGTCTTTGTCGGTCTGTCAGTTAGCCAGTCAGTTGTGTAAGCAGCAGAACGCATGCATCAGAAGACTTCAAGATCATTCGAGTTATAAACTACTGGACTGTCCTCTGTGCCGTGTGCGGGCTCTGGCTGGTCCTCAGGAACCTCCTCCAAGGATTCAAGTGCTTCGTTGGTGTCGCTGGCGAAGGTTTCTCGAGAGACATCGTCATGCTCTTGCAGGTTCAAAGTGTTGAGAGCTTGTTTCATCTTCTTGGCAACAACGTGTCTCCGCCGCTTCTTGGCCGCTTTTTTGCTGGTACACTCTTTCTGGTTCTCGTCATGAAATATttcCTTGACTTCATCATGAGTAATACTAGGAGTGTTCTTCAGTAGGTTTAAATACACCCCTCCAGGGGTCCGCCTTCTACTGCCATCCACAGTGTAAAGACCTCCGTTTTGTTCAATTGTTGCAGTCTCTGAAAGCAGCTCTATTGCTTTCTTCGCCCCGATCACCTTCACAACACGTTCTATTAACTCCTTCTTTGGCTCCATTaacCTATGAGCTATTTCATCAATTACTTTCTCTTCAGGGTCCTCTGGAGTAATCTCATAACGTCCCTTTAAGTCCATCTCAGCTCTAGCCCCCAGCCTATCTTTGGCTGACCGCTTCCTCTTAAGGTGGCAGTCACTCTGCTCTTCTGGTGTTTCATGCTGCATATACTGCTCTAGCTGGTTGTCCAGCATAGCCTCCATGCCCTGTGCCTGCTCCTGCTTCTCCTTTTCAATCAGCTTGCGTGCCAGGATGTAGTTGTATGTCTCGCTCTGACGATTGTCCATACTTATGCCTCCCTCCACCCCAAAGATGCCAAGCTCTGCCGCAACAGCGTCCTGGTTCTGCTCCTGCACCACAGAGCCCCAAATGTTGTTCACCTTACGGCCTGGGGGCCCTGTAGCAGCCCTGGGAGCTCCAAACGGTGCAGGAGGCAAAGGAGCCGGGACACTGGAACATTTCTGCCGCTTTCGCCTCCAAAGAGCAGCCTCTTCCTCTGAGTCAGAGTTGCTGTCGCTGGAGTCGGCTTGCATGGAACTGCGGTAACTGTTGGTGGGTGGAACCGCTGGCAGTGCATCTCTTCTTTGGAAGAACTGACTTGAAAAGGCTCCTGCTGAGGGCATCTGTAGAAAAGCAGTCAAATAGATCAGacagatcagtaacagaaaaaaaa
>TU242319
AGGTTTAGTGAGATTTTCCTAACAGCTGGGTTTCCAGATATTTTCCACCATTTACCTAGGGAATGATTCCAATTTAGTGCACTACTATGCTTAATTTATGTTAGAAAATTTAACAAACAGCCATTTAATACTAGTAGAGAATCAGAGCAAGTGCAGTTTTAATAAGCctcactaaaaaatatataaagtataaggctatcattaaacaaatatgtttaaacTCAACAAAAGAAAATGACTCCAAAAACTCATGTTAACAAGACATCAGTTTCATGTCCTTCTAGTGCAGTCCAGTTGTGTCCATTTTCTCCAACAGAAGAGGAAGGTTTTTAAATTAGTGTCCCCAAAACGCATCAGCGGCCGAAACCAGGGAGCAAGTCAAAGATACATATCTGAAAGTAACTGAAAGCTGTTTAACCCATCCTGAATATTCTGACTGTGGGATTTAATCATAACAGAAGGTTTACTGTCCTAATGTATCATTGATGTCCGTCTTTGTCGGTCTGTCAGTTAGCCAGTCAGTTGTGTAAGCAGCAGAACGCATGCATCAGAAGACTTCAAGATCATTCGAGTTATAAACTACTGGACTGTCCTCTGTGCCGTGTGCGGGCTCTGGCTGGTCCTCAGGAACCTCCTCCAAGGATTCAAGTGCTTCGTTGGTGTCGCTGGCGAAGGTTTCTCGAGAGACATCGTCATGCTCTTGCAGGTTCAAAGTGTTGAGAGCTTGTTTCATCTTCTTGGCAACAACGTGTCTCCGCCGCTTCTTGGCCGCTTTTTTGCTGGTACACTCTTTCTGGTTCTCGTCATGAAATATttcCTTGACTTCATCATGAGTAATACTAGGAGTGTTCTTCAGTAGGTTTAAATACACCCCTCCAGGGGTCCGCCTTCTACTGCCATCCACAGTGTAAAGACCTCCGTTTTGTTCAATTGTTGCAGTCTCTGAAAGCAGCTCTATTGCTTTCTTCGCCCCGATCACCTTCACAACACGTTCTATTAACTCCTTCTTTGGCTCCATTaacCTATGAGCTATTTCATCAATTACTTTCTCTTCAGGGTCCTCTGGAGTAATCTCATAACGTCCCTTTAAGTCCATCTCAGCTCTAGCCCCCAGCCTATCTTTGGCTGACCGCTTCCTCTTAAGGTGGCAGTCACTCTGCTCTTCTGGTGTTTCATGCTGCATATACTGCTCTAGCTGGTTGTCCAGCATAGCCTCCATGCCCTGTGCCTGCTCCTGCTTCTCCTTTTCAATCAGCTTGCGTGCCAGGATGTAGTTGTATGTCTCGCTCTGACGATTGTCCATACTTATGCCTCCCTCCACCCCAAAGATGCCAAGCTCTGCCGCAACAGCGTCCTGGTTCTGCTCCTGCACCACAGAGCCCCAAATGTTGTTCACCTTACGGCCTGGGGGCCCTGTAGCAGCCCTGGGAGCTCCAAACGGTGCAGGAGGCAAAGGAGCCGGGACACTGGAACATTTCTGCCGCTTTCGCCTCCAAAGAGCAGCCTCTTCCTCTGAGTCAGAGTTGCTGTCGCTGGAGTCGGCTTGCATGGAACTGCGGTAACTGTTGGTGGGTGGAACCGCTGGCAGTGCATCTCTTCTTTGGAAGAACTGACTTGAAAAGGCTCCTGCTGAGGGCATCTGGGGCCGGTCATCTGAAGCCGCCTGCATTTCGGGCTCTGAGCCGCTGAGCTCTCCATCCTCCAGATCCTCCATTGTGTCTCTGTTGCGATCACCCGCCATTTCTCCCGCACGGAAGTTTGGCGTAGTTACACGCGCACGACGTCATTCGGCTcgtctgttcttcttcttcttcttcttctgtgggGTTTTACGGCAGCCGGCATCCAACTTGTCCATTGCTGCCTCCTTCAGGATCATTCCGCCTTTACCTCATATCCTCTTAATGAGGCCAGTATCTCTGAAATACTTAAATAACCAGTACTTCCCCTTCCCAGCATATCCCAGTTCTAGAATATTACCCAAAGACACTACTAACATACCCAATTTCCTCAGCTCTGTAAAAAGTACTTGCCTCTCCGTAGTAAATTTAGTACAATCCAAAATCACATGCTGTACTGTCTCTGGTTGCTGACACTCTATGCACAGCCCATCTTGATGCTTCCCCATACAGAGTAGAGTATGATTGAGGTAAGTATGACCAAGTCGTAACCTATAGAAAATGACCCCCTCCTCCCTCTTCCATCCTCTGCCCTTACAAAGCGCTAGATCAGACACGCTTTTATGTAATGAAAACAAATGCCGTCCTTTAACTTCTCCCTCCCATTGGTGTTGCCATTGTAAAATAATCTGTTTCCAGACAATACACTGTCCTTCCGCCTTAGATAGACTAATATGGACATCTATACTGCCCTTCCTCACCGCTGCCTTCG

Function

symbol description
phax Predicted to enable RNA binding activity. Predicted to be involved in snRNA export from nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human PHAX (phosphorylated adaptor for RNA export).

NR:

description
PREDICTED: phosphorylated adapter RNA export protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242318 False 1689 lncRNA 0.46 4 24506476 24509510
TU242319 True 2391 lncRNA 0.47 5 24505065 24509510

Neighbor

gene id symbol gene type direction distance location
aldh7a1 aldh7a1 coding downstream 4636 24489798 ~ 24500429 (-)
LOC103023192 LOC108424566,LOC108277262,LOC105901058,LOC106603267,LOC105010780 coding downstream 215772 24252134 ~ 24289293 (-)
LOC103022888 NA coding downstream 255083 24234922 ~ 24249982 (-)
apbb1 apbb1 coding downstream 273401 24217172 ~ 24231664 (-)
LOC103038694 LOC108427265,LOC108277159 coding downstream 426699 23706701 ~ 24078366 (-)
LOC103023834 LOC108424422 coding upstream 2321 24511831 ~ 24516598 (-)
march3 march3 coding upstream 37493 24547003 ~ 24586405 (-)
c20h5orf63 NA coding upstream 77750 24587260 ~ 24589663 (-)
LOC103037512 LOC103037512,LOC108423775 coding upstream 453116 24962626 ~ 24980089 (-)
kiaa1024l NA coding upstream 536704 25046214 ~ 25052132 (-)
G178855 gramd3 non-coding downstream 27546 24472432 ~ 24477519 (-)
G178823 NA non-coding downstream 211721 24291892 ~ 24293344 (-)
LOC111195074 NA non-coding downstream 306917 24197201 ~ 24198148 (-)
G178810 NA non-coding downstream 316292 24156674 ~ 24188773 (-)
G178809 NA non-coding downstream 335074 24150304 ~ 24169991 (-)
G178862 lmnb1 non-coding upstream 15420 24524930 ~ 24542747 (-)
G178864 NA non-coding upstream 21284 24530794 ~ 24533188 (-)
G178868 NA non-coding upstream 72975 24582485 ~ 24583669 (-)
LOC111195076 NA non-coding upstream 85735 24595245 ~ 24602315 (-)
G178880 NA non-coding upstream 94141 24603651 ~ 24625825 (-)
sh2d4a sh2d4a other downstream 1547839 22945161 ~ 22957226 (-)
LOC111195067 NA other downstream 1563401 22935490 ~ 22941664 (-)
G178450 NA other downstream 1832382 22672132 ~ 22672683 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other downstream 1995282 22501318 ~ 22509783 (-)
G178426 NA other downstream 2048286 22455497 ~ 22456779 (-)
G178982 hint1,LOC107665476 other upstream 621472 25130982 ~ 25134156 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other upstream 693815 25203325 ~ 25207386 (-)
thsd1 thsd1 other upstream 784165 25293675 ~ 25303083 (-)
LOC103043022 LOC108410630,LOC107556853 other upstream 854422 25363932 ~ 25472244 (-)
LOC103047293 LOC108410718,LOC106581537 other upstream 1146745 25656255 ~ 25864474 (-)

Expression


Co-expression Network